Gene Information

Name : Tmar_1973 (Tmar_1973)
Accession : YP_004102783.1
Strain : Thermaerobacter marianensis DSM 12885
Genome accession: NC_014831
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 2374298 - 2375170 bp
Length : 873 bp
Strand : -
Note : COGs: COG1121 ABC-type Mn/Zn transporters ATPase component; InterPro IPR003593: IPR003439: IPR017871; KEGG: cag:Cagg_3554 ABC transporter related; PFAM: ABC transporter; SMART: ATPase AAA; SPTR: ABC transporter related; PFAM: ABC transporter

DNA sequence : 
GTGACGGAGCGCGGTCACCTGGTGCAGCCTGGAGCCAGTGCCGTGAACGACCAGGGCGGTGCCCGGGATCCCGCGCCGGA
GGTTCCGGCGGCGGTGGGCGGGGGCGAGCCGGCACGGGTCCCCGCGGTGGAGCTGCGCAACCTCTACGTCGCCTACGACC
ACCGGCCGGTGCTGCGGGGCGTCCGCCTGACGATCCCGCCGGGGCTGCTGGTGGCCTTCGTGGGGCCCAACGGGGCCGGA
AAGTCGACGCTCTTCAAGGCGATCCTGGGGCTGGTGCGGCCCGCCGCGGGGTCGGTGCGGATCTTCGGCGAGCCCGTGGC
GGCCCAGCGGCGGCGCATCGCCTACGTGCCCCAGCGCGAGCTGATCGACTGGGACTTCCCCGCCACCGTGGCCGACGTGG
TGATGATGGGCCGGGTGCCGCGCCTGGGGTGGCTGCGCGGCCCCGGTCCCGCCGACCGCCGGCGGGTCGCCGAGGCCCTT
GAGGAGGTCGGCATGGCGGCCTACGCCCGCCGGCCCCTGGCCGCCCTGTCCGGCGGGCAGCAGCAGCGGGTCTTCATCGC
CCGGGCCCTGGCCCAGGACGCCGACCTGATTCTCCTGGACGAACCCTACGCCGGGGTGGACGCCGCCACCCAGGAGATGG
TGCGGCACCTGCTGGCCCGGCTGCGGGACGCCGGCAAGACGATCCTGGTGGTGGACCACGACCTGGGCGGCATCGGCCAC
TACGACCGGGTCGCCCTGATCAACGGGCGGGTCGTCGCCTTCGGGCCGCCCGCCCAGGTGATGACGCCCGAGCGGCTGCG
CGAGACCTACGGCGGCCGCTTGACCTACCTCGACCGGGTCGCCCGGCCGGTACCGGGGGGGATGCGGCCGTGA

Protein sequence : 
MTERGHLVQPGASAVNDQGGARDPAPEVPAAVGGGEPARVPAVELRNLYVAYDHRPVLRGVRLTIPPGLLVAFVGPNGAG
KSTLFKAILGLVRPAAGSVRIFGEPVAAQRRRIAYVPQRELIDWDFPATVADVVMMGRVPRLGWLRGPGPADRRRVAEAL
EEVGMAAYARRPLAALSGGQQQRVFIARALAQDADLILLDEPYAGVDAATQEMVRHLLARLRDAGKTILVVDHDLGGIGH
YDRVALINGRVVAFGPPAQVMTPERLRETYGGRLTYLDRVARPVPGGMRP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-41 45
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 2e-41 45
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 2e-41 45
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 2e-40 45
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 2e-40 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tmar_1973 YP_004102783.1 ABC transporter BAC0400 Protein 9e-51 55
Tmar_1973 YP_004102783.1 ABC transporter BAC0350 Protein 1e-41 45
Tmar_1973 YP_004102783.1 ABC transporter BAC0440 Protein 3e-39 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tmar_1973 YP_004102783.1 ABC transporter VFG0526 Protein 1e-41 45