Gene Information

Name : Tmar_1612 (Tmar_1612)
Accession : YP_004102448.1
Strain : Thermaerobacter marianensis DSM 12885
Genome accession: NC_014831
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1941356 - 1942132 bp
Length : 777 bp
Strand : +
Note : COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: adg:Adeg_1028 transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator d

DNA sequence : 
ATGGGGACATGGGGAGATCACCCCGGGACCGCGGATTCGCCGCAGCCGGAGCGTCGTCCGGGCGGCGACGCTCCGGCGGT
GCTCGTGGTCGACGACGAGGCAGACATCCGGCGCCTGCTCCGGTTGTACCTGAAACGGGCCGGCTTCGCCGTCGTCGAGG
CCGGCGACGGGGTTTCCGCTTTGGCGGCTTTCGATGCGCTGGTCCGGCAAGGCCGTGCCGTGGCGGCGGTGGTGCTCGAC
CTGATGTTACCCGGCCTGGACGGGTGGGAGGTCTGTGAGCGCCTGCGGGAACGCAGCCAGGTCCCCATCCTGATGCTCAC
GGCCCGCGGTGAGATCCACGAGCGGCTGCACGGCTTTCACCTGGGTGCCGACGACTATGTGGTGAAACCTTTCGACCCCC
GGGAAGTCGTGGCCCGCATCCGTGCGCTCAGCCGCCGCGCTGCACCGGCTCCCGGCGGAGTCCGGCCGGCCGGTGCCGAG
CCGGCATTGCACTTCGGGAGGCTGACCATCGACCCGGGCGCCCGGACGGTGACCGTCGATGGCCATCCCGTGTCGCTCAC
TCGAACCGAATTCGACCTGCTGTATACCCTGGCCCAACACCGGGGTCAGACCCTCAGCCGGCAGCAGATCTTAGACCGCC
TGCGGGGCGGTGACTACTTCGGCGACGAACGGGTCATCGACAGCCACATCCGCAACCTGCGAGAGAAGCTGGAGCCGTTC
GGGCTGCGAAAGCTCATCGCCACGGTTTGGGGCGTGGGGTATCGTTTCGAAGGTTGA

Protein sequence : 
MGTWGDHPGTADSPQPERRPGGDAPAVLVVDDEADIRRLLRLYLKRAGFAVVEAGDGVSALAAFDALVRQGRAVAAVVLD
LMLPGLDGWEVCERLRERSQVPILMLTARGEIHERLHGFHLGADDYVVKPFDPREVVARIRALSRRAAPAPGGVRPAGAE
PALHFGRLTIDPGARTVTVDGHPVSLTRTEFDLLYTLAQHRGQTLSRQQILDRLRGGDYFGDERVIDSHIRNLREKLEPF
GLRKLIATVWGVGYRFEG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-16 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tmar_1612 YP_004102448.1 transcriptional regulator CP004022.1.gene3215. Protein 5e-28 43
Tmar_1612 YP_004102448.1 transcriptional regulator HE999704.1.gene2815. Protein 4e-35 41
Tmar_1612 YP_004102448.1 transcriptional regulator NC_012469.1.7685629. Protein 1e-34 41
Tmar_1612 YP_004102448.1 transcriptional regulator CP000034.1.gene3671. Protein 6e-32 41
Tmar_1612 YP_004102448.1 transcriptional regulator CP000034.1.gene3834. Protein 7e-24 41
Tmar_1612 YP_004102448.1 transcriptional regulator CP000647.1.gene4257. Protein 8e-24 41
Tmar_1612 YP_004102448.1 transcriptional regulator CP001138.1.gene4273. Protein 7e-24 41
Tmar_1612 YP_004102448.1 transcriptional regulator NC_002695.1.915041.p Protein 7e-24 41
Tmar_1612 YP_004102448.1 transcriptional regulator BAC0533 Protein 8e-24 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tmar_1612 YP_004102448.1 transcriptional regulator VFG1390 Protein 7e-29 42