Gene Information

Name : Tmar_1356 (Tmar_1356)
Accession : YP_004102196.1
Strain : Thermaerobacter marianensis DSM 12885
Genome accession: NC_014831
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1627881 - 1628579 bp
Length : 699 bp
Strand : -
Note : COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: sen:SACE_3343 two-component response regulator; PFAM: response regulator receiver; transcriptional regu

DNA sequence :
TTGGCCGGGGAGCGCATCCTGGTGGTGGACGACGAGCCGGGCATCCGGGAGATCTGCCGGCTCTACCTGGAGCGGGACGG
GTTTTCGGTACGGGAGGCGGCCAGCGTCGCGGGCGCCCGCGCCGCCCTGCAGCGGGAGTCGCCGGCGCTGGTGGTCCTCG
ACCTGATGCTGCCCGACGGTAACGGTCTGGACCTCTGCCGGGAGCTGGTCGACCAGGGCGTGCCGGTGATCTGCCTGACC
GCCCGGGCGGAGGAGACGGACCGCGTCCTCGGCCTGGAGCTGGGTGCCGACGACTACGTCACCAAGCCCTTCAGTCCCCG
GGAGCTGGTGGCGCGGGTGCGGGCGGTCCTGCGGCGGGCCCGGGGGCCGCGGGCAGCGGCGCCGGTGGTGGTGCGCTTCG
GGCGGTGTGCCGTGGATCTGGCGGCCCGCCGGCTGCTGGTGGACGACCGCGAGGTGCCCCTGACACCCAAGGAGTTCGAC
CTCCTGGCTCTTCTGGTCACCCATCCCCACCGGGTGTTCACCCGCCAGCAGCTGCTGGAGCAGGTCTGGGACTTCGCCTA
CGCCGGCGACACCCGCACCGTCGACGTCCACGTCCAGCGGTTGCGCCGGAAGATCGAGCCCGACCCCCAGCGGCCGCGGT
ACCTCAAGACGGTCTGGAGCGTCGGGTACCGGTTCGACCCCGAGGGCGAGGCGGTGTGA

Protein sequence :
MAGERILVVDDEPGIREICRLYLERDGFSVREAASVAGARAALQRESPALVVLDLMLPDGNGLDLCRELVDQGVPVICLT
ARAEETDRVLGLELGADDYVTKPFSPRELVARVRAVLRRARGPRAAAPVVVRFGRCAVDLAARRLLVDDREVPLTPKEFD
LLALLVTHPHRVFTRQQLLEQVWDFAYAGDTRTVDVHVQRLRRKIEPDPQRPRYLKTVWSVGYRFDPEGEAV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CDB402_0209 YP_005126722.1 two-component system response regulator Not tested Not named Protein 1e-20 41
mprA YP_005680459.1 response regulator mprA Not tested PiCp 3 Protein 7e-21 41
mprA YP_005682550.1 response regulator mprA Not tested PiCp 3 Protein 7e-21 41
tcsR1 YP_003782583.1 two-component system transcriptional regulatory protein Not tested PiCp 3 Protein 7e-21 41
mprA YP_005684640.1 response regulator mprA Not tested PiCp 3 Protein 7e-21 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tmar_1356 YP_004102196.1 transcriptional regulator AE000516.2.gene3505. Protein 6e-37 48
Tmar_1356 YP_004102196.1 transcriptional regulator CP000034.1.gene3671. Protein 4e-37 45
Tmar_1356 YP_004102196.1 transcriptional regulator HE999704.1.gene2815. Protein 1e-38 44
Tmar_1356 YP_004102196.1 transcriptional regulator NC_003923.1003749.p0 Protein 3e-35 43
Tmar_1356 YP_004102196.1 transcriptional regulator BAC0111 Protein 2e-21 43
Tmar_1356 YP_004102196.1 transcriptional regulator NC_002952.2859905.p0 Protein 3e-35 42
Tmar_1356 YP_004102196.1 transcriptional regulator NC_009641.5332272.p0 Protein 2e-35 42
Tmar_1356 YP_004102196.1 transcriptional regulator NC_013450.8614421.p0 Protein 2e-35 42
Tmar_1356 YP_004102196.1 transcriptional regulator NC_007793.3914279.p0 Protein 2e-35 42
Tmar_1356 YP_004102196.1 transcriptional regulator NC_002745.1124361.p0 Protein 2e-35 42
Tmar_1356 YP_004102196.1 transcriptional regulator NC_009782.5559369.p0 Protein 2e-35 42
Tmar_1356 YP_004102196.1 transcriptional regulator NC_002951.3237708.p0 Protein 2e-35 42
Tmar_1356 YP_004102196.1 transcriptional regulator NC_007622.3794472.p0 Protein 2e-35 42
Tmar_1356 YP_004102196.1 transcriptional regulator NC_002758.1121668.p0 Protein 2e-35 42
Tmar_1356 YP_004102196.1 transcriptional regulator BAC0347 Protein 7e-16 42
Tmar_1356 YP_004102196.1 transcriptional regulator NC_010410.6002989.p0 Protein 3e-29 41
Tmar_1356 YP_004102196.1 transcriptional regulator NC_010400.5986590.p0 Protein 3e-28 41
Tmar_1356 YP_004102196.1 transcriptional regulator NC_011595.7057856.p0 Protein 3e-29 41
Tmar_1356 YP_004102196.1 transcriptional regulator NC_012469.1.7685629. Protein 6e-33 41
Tmar_1356 YP_004102196.1 transcriptional regulator NC_008702.1.4607594. Protein 6e-28 41
Tmar_1356 YP_004102196.1 transcriptional regulator CP001918.1.gene5135. Protein 2e-13 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tmar_1356 YP_004102196.1 transcriptional regulator VFG1389 Protein 2e-23 45
Tmar_1356 YP_004102196.1 transcriptional regulator VFG1390 Protein 2e-29 42