Gene Information

Name : Tmar_0992 (Tmar_0992)
Accession : YP_004101832.1
Strain : Thermaerobacter marianensis DSM 12885
Genome accession: NC_014831
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1203324 - 1204007 bp
Length : 684 bp
Strand : +
Note : COGs: COG1338 flagellar biosynthesis pathway component FliP; InterPro IPR005837: IPR005838; KEGG: nth:Nther_1409 flagellar biosynthesis protein FliP; PFAM: type III secretion system inner membrane P protein; SPTR: flagellar biosynthetic protein FliP; TIGR

DNA sequence : 
ATGATCCCCCAGGTCAACGTCACCCTGCAGCCGGCGACCGGGCCCGAGGGGCTGGGCGTCGCCCTGCAGATCCTGCTGCT
CCTGACGGTGCTGTCCCTGGCCCCGGCCATTCTGATCATGATGACGGGGTTCACCCGGATCGTGGTGGCCCTGTCGTTCC
TGCGCAGCGCCCTGGGCACCCAGCAGGCTCCGCCCAACCAGGTGCTGGTGGGTCTGGCCCTTTTCCTCACCGTGTTCGTC
ATGGCACCGGTCTGGCAGCAGGTCTACCAGGACGCCTGGGTCCCCTACCGGGACGGGCAGATCGGTCAGGTGGAGGCGCT
GCAGCGGGCCCAGCAGCCCGTGCGGGAGTTCATGTTCCGCTACACCCGCGAGCGGGACCTGGCCCTGTTCCTGGAGCTGT
CGGGCCGGGGCCCCGTGGAATCCCGGGACCAGGTGCCGACCTACGTGCTGATCCCGGCCTTCGCCATCAGCGAGCTGAAG
ACGGCCTTTCAGATCGGGTTCATCCTGTACGTGCCGTTCCTGGTCATCGACATGGTGGTGGCTAGCACCCTGATGTCCAT
GGGCATGCTGATGGTTCCGCCCATGCTGGTCTCCTTACCTTTTAAGATCCTCCTGTTCGTCCTGGTGGATGGGTGGAACC
TGGTGGTGCGGTCGCTGCTGGCCTCCTTCGGCGCAGGGACCTAG

Protein sequence : 
MIPQVNVTLQPATGPEGLGVALQILLLLTVLSLAPAILIMMTGFTRIVVALSFLRSALGTQQAPPNQVLVGLALFLTVFV
MAPVWQQVYQDAWVPYRDGQIGQVEALQRAQQPVREFMFRYTRERDLALFLELSGRGPVESRDQVPTYVLIPAFAISELK
TAFQIGFILYVPFLVIDMVVASTLMSMGMLMVPPMLVSLPFKILLFVLVDGWNLVVRSLLASFGAGT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 1e-32 43
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 1e-22 43
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 8e-23 43
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 2e-20 43
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 2e-20 43
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 5e-29 43
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 9e-33 43
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 1e-32 43
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 1e-32 43
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 8e-33 43
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 8e-33 43
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 4e-21 43
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 3e-21 43
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 7e-32 42
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 2e-26 42
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 6e-32 42
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 4e-26 41
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 4e-26 41
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 4e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tmar_0992 YP_004101832.1 flagellar biosynthetic protein FliP VFG2338 Protein 8e-52 58
Tmar_0992 YP_004101832.1 flagellar biosynthetic protein FliP VFG2494 Protein 3e-52 58
Tmar_0992 YP_004101832.1 flagellar biosynthetic protein FliP VFG1259 Protein 6e-53 57
Tmar_0992 YP_004101832.1 flagellar biosynthetic protein FliP VFG2016 Protein 5e-47 56