Gene Information

Name : Intca_0636 (Intca_0636)
Accession : YP_004097908.1
Strain : Intrasporangium calvum DSM 43043
Genome accession: NC_014830
Putative virulence/resistance : Virulence
Product : ATPase AAA
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 694245 - 696869 bp
Length : 2625 bp
Strand : -
Note : COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR003593: IPR001943: IPR001270: IPR004176: IPR 003959: IPR013093: IPR019489: IPR018368; KEGG: sma:SAV_4697 ATP-dependent Clp protease; PFAM: ATPase AAA; Clp domain protein; ATPase

DNA sequence :
ATGTTTGAACGGTTCACCGATCGGGCCCGACGGGTGGTGGTCCTGGCGCAGGAGGAAGCGCGCCTGCTCAACCACAACTA
CATCGGCACCGAGCACATCCTCCTGGGTCTGATCCACGAAGGCGAAGGCGTGGCCGCCAAGGCTCTCGAGAGCCTCGACA
TCTCGCTCGAAGCGGTCCGCGCCCAGGTCCAGGAGATCATCGGCCAGGGGCAGCAGGCCCCGACTGGCCACATCCCCTTC
ACGCCGCGCGCGAAGAAGGTCCTCGAGTACTCGCTCCGCGAGGCGCTCCAGCTCGGCCACAGCTACATCGGCACCGAGCA
CATCCTCCTCGGCCTGATCCGCGAGGGCGAGGGCGTCGCCGCCCAGGTCCTCGTCAAGCTCGGCGCGGAGCTGAACAAGG
TGCGCCAGCAGGTCATCCAGCTGCTCTCCGGCTACCAGGGCCAGGGCGGCCAAGGGGAGAAGACCGGCGCTGGTGTGGGC
CAGGCGACCGGCGAGGGGACCCCGGCGGGCTCCCTCGTCCTCGACCAGTTCGGCCGCAACCTGACGCAGGCCGCCCGTGA
GGGCAAGCTCGACCCGGTCATCGGGCGCGAGAAGGAGATCGAGCGGGTCATGCAGGTGCTGTCCCGCCGCACGAAGAACA
ACCCCGTCCTCATCGGCGAGCCCGGCGTCGGCAAGACCGCCGTTGTCGAGGGTCTCGCCCAGGACATCGTCAAGGGCGAG
GTGCCCGAGACCCTCAAGGACAAGCAGCTCTACACCCTCGACCTCGGGTCGCTCGTGGCGGGCAGCCGCTACCGCGGTGA
CTTCGAGGAGCGCCTCAAGAAGGTCCTCAAGGAGATCCGCACCCGCGGCGACATCATCATCTTCATCGACGAGATCCACA
CCCTCGTCGGTGCGGGTGCCGCCGAGGGTGCCATCGACGCCGCGAGCATCCTCAAGCCGATGCTGGCCCGTGGTGAGCTG
CAGACCATCGGCGCGACCACCCTCGACGAGTACCGCAAGCACATCGAGAAGGACTCGGCCCTCGAGCGCCGCTTCCAGCC
GATCCAGGTTCAGGAGCCGACGCTCCCGCACACGATCGAGATCCTCAAGGGCCTGCGGGACCGGTACGAGGCGCACCACC
GTGTGACGATCACCGACGGCGCGCTCGTCGCAGCCGCCAACATGGCGGACCGCTACGTCAACGACCGCTTCCTGCCCGAC
AAGGCGATCGACCTCATCGACGAGGCGGGCGCGCGACTGCGGATCCGCCGCATGACGGCCCCGCCGGACCTGCGCGAGTT
CGACGAGAAGATCGCGCACCTCGTCCGTGAGAAGGAGTCGGCCATAGACGGCCAGGACTTCGAACGGGCCGCCCGTGTGC
GGGACGAGGAGAAGAAGCTGCGCGCCGAGAAGGCCGAGCGCGAGGCCCAGTGGAAGTCGGGCGACATGGACGTCGTGGCC
GAGGTCGATGAGGAGCTCATCGCCGAGGTCCTGGCCGCCAGCACCGGCATCCCGGTCTTCAAGCTGACCGAGGAGGAGTC
GAGCCGCCTGCTCCACATGGAGGACGAGCTGCACAAGCGGATCGTCGGCATGAACGACGCCGTCAAGGCGCTGTCCCAGG
CCATCCGGCGCACCAGGGCCGGCCTCAAGGACCCCCGCCGCCCCGGAGGTTCGTTCATCTTCGCCGGGCCGACCGGTGTC
GGTAAGACCGAGCTGGCCAAGACGCTCGCCGAGTTCCTCTTCGGCAGCGAGGACGCCTTGATCCAGCTGGACATGTCGGA
GTTCTCCGAGAAGCACACGGTCAGCCGACTCTTCGGGTCCCCTCCCGGCTACGTCGGCTACGAGGAGGGCGGCCAGCTGA
CCGAGAAGGTCCGCCGCAAGCCGTTCTCGGTCGTGCTCTTCGACGAGGTCGAGAAGGCCCACCCGGAGATCTTCAACTCA
CTCCTCCAGGTCCTCGAGGACGGCCGACTCACCGACTCCCAGGGCCGGATGGTCGACTTCAAGAACACCGTCATCATCAT
GACGACCAACCTCGGCACCAGGGACATCTCGAAGGCCTCCATGGGCTTCAGCGCCGGACCTGACACCCGCTCGGACTACG
AGCGGATGAAGGCGAAGGTCATCGACGAGCTGAAGCAGCACTTCCGGCCGGAGTTCCTCAACCGGGTCGACGACACCATC
GTCTTCCCGCACCTGTCCAGGGACGAGATCATCCAGATCGTCGACCTCGAGATCGCCAAGCTCGACAAGCGACTCAAGGA
CAAGGACATGGGGATCGACCTCACGCAGGCGGCGAAGGACCTGCTCGCCAAGAAGGGTTACGACCACGTGCTCGGTGCGC
GACCGCTGCGTCGCACCATCCAGCGCGAGATCGAGGACGCCCTCTCGGAGAAGATCCTCTACGCGGAGTTCACGTCGGGG
CAGTACATCAAGGTCGACACCGAGGGCGAGGGCAAGGACGAGAAGTTCACCTTCTCCGACATGGCCCACCCCGGGCACCG
TCCGGCCGACGACCTGCCGGAGCTGCCCGAGGGACCGGCGCTGGACGAGGCACTGGGGGCCGAGTTCGTGGCCGTCCCCG
ACCCCACTCGGGACGTCACCGGCAGCGCGGGACCGTCCGCGGCGTCCGGCACTGAGACGGCCTGA

Protein sequence :
MFERFTDRARRVVVLAQEEARLLNHNYIGTEHILLGLIHEGEGVAAKALESLDISLEAVRAQVQEIIGQGQQAPTGHIPF
TPRAKKVLEYSLREALQLGHSYIGTEHILLGLIREGEGVAAQVLVKLGAELNKVRQQVIQLLSGYQGQGGQGEKTGAGVG
QATGEGTPAGSLVLDQFGRNLTQAAREGKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQDIVKGE
VPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEIRTRGDIIIFIDEIHTLVGAGAAEGAIDAASILKPMLARGEL
QTIGATTLDEYRKHIEKDSALERRFQPIQVQEPTLPHTIEILKGLRDRYEAHHRVTITDGALVAAANMADRYVNDRFLPD
KAIDLIDEAGARLRIRRMTAPPDLREFDEKIAHLVREKESAIDGQDFERAARVRDEEKKLRAEKAEREAQWKSGDMDVVA
EVDEELIAEVLAASTGIPVFKLTEEESSRLLHMEDELHKRIVGMNDAVKALSQAIRRTRAGLKDPRRPGGSFIFAGPTGV
GKTELAKTLAEFLFGSEDALIQLDMSEFSEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDEVEKAHPEIFNS
LLQVLEDGRLTDSQGRMVDFKNTVIIMTTNLGTRDISKASMGFSAGPDTRSDYERMKAKVIDELKQHFRPEFLNRVDDTI
VFPHLSRDEIIQIVDLEIAKLDKRLKDKDMGIDLTQAAKDLLAKKGYDHVLGARPLRRTIQREIEDALSEKILYAEFTSG
QYIKVDTEGEGKDEKFTFSDMAHPGHRPADDLPELPEGPALDEALGAEFVAVPDPTRDVTGSAGPSAASGTETA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 74

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Intca_0636 YP_004097908.1 ATPase AAA VFG0079 Protein 0.0 61
Intca_0636 YP_004097908.1 ATPase AAA VFG0080 Protein 2e-152 52