Gene Information

Name : Intca_3505 (Intca_3505)
Accession : YP_004100707.1
Strain : Intrasporangium calvum DSM 43043
Genome accession: NC_014830
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 3875040 - 3875975 bp
Length : 936 bp
Strand : -
Note : COGs: COG2801 transposase and inactivated derivatives; InterPro IPR001584; KEGG: gbr:Gbro_4732 integrase catalytic region; PFAM: Integrase catalytic region; SPTR: Integrase catalytic region; PFAM: Integrase core domain

DNA sequence : 
GTGATCGTGGCCTACATCGACACCTACCGGGCCCGCTTCGGCGTCGAGCCGATCTGTACCGTGCTGTCCGAGCACGGCAT
GAAGATCGCGCCGAGCACCTACTACGCCCGCAAGGCCTGCCCGCTCAGCGATGCGGCGCTCGAGGAGGCGTATCTGGTCA
ACGCGATCTTCACACTGTGGCAACAGAATTGGCGTGTCTACGGGGTGCGCAAGCTCTATCACGAGGCGCGCCGTGCCGGC
CTTGGCGTGGGCCGCGACCAGGTGGCGCGGCTGATGCGGATCGCCGGGATCCGCGGGGTACGCCGAGGAACGCACCACAC
CGTGACGACCCGGCGGGATGAGGCGGCGGCCCGGCACCCGGACCTGGTCAAGCGGGGCTGGGACGTGCCCACTCGGGTGG
ACCAGCTGTGGGTGGCCGACTTCTCCTACGTGTGGACGCTGGCCGGGTTCGTGTACGTGGCGTTCGTCGTGGACGTGTTC
TCCCGCCGGATTCTGGGCTGGCGGGTGACCACGAGCAAGCACACCTCGATGGTGACCGACGCGCTGCGCCAAGCCCTCAG
CCTGCGTCAGCGTCACCAATCGCACTGGGATGCAACAGGGTTGGTCCATCACTCGGATGCCGGGAGCCAGTACACCTCGA
TCGCGTTCACCGCTGAGCTGCTCGAGGCCGGCATCGCCGGCTCGATCGGCACCGTCGGCGATGCGCTCGACAACGCGCTC
TGCGAGAGCACCATCGGGCTGTTCAAGACCGAGGCCATCGACCTGCCCGGTCCCGCGTGGAAGGACCGCCGCGAGGTCGA
GTGGCAGGTCGCCCGCTGGGTCCAGTGGTACAACGCCCGGCGGCTGCACTCCTCGATCGGGTACCTGCCCCCGGTTGAGT
TCGAGCACCTTCACCGGCAGGCTACGACCGTGACCCCCATCCCGGAGGTCGCGTAA

Protein sequence : 
MIVAYIDTYRARFGVEPICTVLSEHGMKIAPSTYYARKACPLSDAALEEAYLVNAIFTLWQQNWRVYGVRKLYHEARRAG
LGVGRDQVARLMRIAGIRGVRRGTHHTVTTRRDEAAARHPDLVKRGWDVPTRVDQLWVADFSYVWTLAGFVYVAFVVDVF
SRRILGWRVTTSKHTSMVTDALRQALSLRQRHQSHWDATGLVHHSDAGSQYTSIAFTAELLEAGIAGSIGTVGDALDNAL
CESTIGLFKTEAIDLPGPAWKDRREVEWQVARWVQWYNARRLHSSIGYLPPVEFEHLHRQATTVTPIPEVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 2e-35 50
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 8e-40 45
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-40 45
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-40 45
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 4e-40 45
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-39 45
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-26 44
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 1e-39 44
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 1e-39 44
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 4e-38 44
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 3e-38 44
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 4e-38 44
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 6e-39 44
Z1198 NP_286733.1 transposase Not tested TAI Protein 3e-39 44
Z1638 NP_287141.1 transposase Not tested TAI Protein 3e-39 44
Z1221 NP_286756.1 transposase Not tested TAI Protein 3e-39 44
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 9e-38 44
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 4e-38 44
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 9e-38 43
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 4e-44 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Intca_3505 YP_004100707.1 integrase catalytic subunit VFG1602 Protein 5e-38 43