Gene Information

Name : Intca_2833 (Intca_2833)
Accession : YP_004100061.1
Strain : Intrasporangium calvum DSM 43043
Genome accession: NC_014830
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3155823 - 3156494 bp
Length : 672 bp
Strand : +
Note : COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: sco:SCO5872 turgor pressure regulator; PFAM: response regulator receiver; transcriptional regulator dom

DNA sequence : 
ATGACCCGCGTCCTGATCGTCGAGGATGACGACCGGCTGCGCCGGACGCTCGCCATCAACCTCCAGGCCCGCAGGCACGA
GGTGCACACGGCAGCTGACGGCGGGACCGGTCTCGAGCTCGCCGCGACCATCCACCCCGACCTGGTCATCCTCGACCTCG
GCCTGCCCGACATGGACGGCGTCGAGATGGTCTCGCTGCTGCGCCGGCGCAGCGCCGTGCCGGTCATCATCCTGTCCGCG
CGGGACGCCGAGGCCACCAAGGTCGCCGCGCTCGATGCCGGCGCTGACGACTACGTCACCAAGCCGTTCGGCATGGAGGA
GCTGCTCGCCCGGATGCGCGCCGCCGTGCGACGGGCGACCCCCGAGGACCTGGCCCACGTCGAGACCCCGACCCTGTCGA
TCGACCTGCGGGCCAAGCGGGTCCTCCGCGACGGGCTCGAGGTCCGGCTGACCCCGACCGAGTGGCACCTGCTCGAGGCG
CTGGTGCGGTCCCCGGGGCGACTCGTCCCGGGACGCGAGCTCCTGCGGCAGGTGTGGGGCCCGTCCTACGGCGAGGAGAC
GAACTACCTGCGGGTCTACATGGCCCAGCTGCGCCGCAAGCTCGAGGAGCTCCCGGCCTCGCCCCGTCACCTCATCACCG
AGCCGGGGCTGGGTTATCGCTTCGAGCTGTGA

Protein sequence : 
MTRVLIVEDDDRLRRTLAINLQARRHEVHTAADGGTGLELAATIHPDLVILDLGLPDMDGVEMVSLLRRRSAVPVIILSA
RDAEATKVAALDAGADDYVTKPFGMEELLARMRAAVRRATPEDLAHVETPTLSIDLRAKRVLRDGLEVRLTPTEWHLLEA
LVRSPGRLVPGRELLRQVWGPSYGEETNYLRVYMAQLRRKLEELPASPRHLITEPGLGYRFEL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0571 NP_814337.1 DNA-binding response regulator Not tested Not named Protein 2e-36 43
ef0091 AAM75294.1 EF0091 Not tested Not named Protein 1e-36 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Intca_2833 YP_004100061.1 transcriptional regulator NC_013450.8614146.p0 Protein 6e-28 41
Intca_2833 YP_004100061.1 transcriptional regulator NC_002951.3238224.p0 Protein 6e-28 41
Intca_2833 YP_004100061.1 transcriptional regulator NC_007793.3914065.p0 Protein 6e-28 41
Intca_2833 YP_004100061.1 transcriptional regulator NC_002758.1121390.p0 Protein 6e-28 41
Intca_2833 YP_004100061.1 transcriptional regulator NC_010079.5776364.p0 Protein 6e-28 41
Intca_2833 YP_004100061.1 transcriptional regulator NC_002952.2859858.p0 Protein 6e-28 41
Intca_2833 YP_004100061.1 transcriptional regulator NC_007622.3794948.p0 Protein 6e-28 41
Intca_2833 YP_004100061.1 transcriptional regulator NC_003923.1003417.p0 Protein 6e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Intca_2833 YP_004100061.1 transcriptional regulator VFG1390 Protein 9e-27 41
Intca_2833 YP_004100061.1 transcriptional regulator VFG1389 Protein 7e-25 41