Gene Information

Name : Intca_2415 (Intca_2415)
Accession : YP_004099649.1
Strain : Intrasporangium calvum DSM 43043
Genome accession: NC_014830
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2703305 - 2704030 bp
Length : 726 bp
Strand : +
Note : COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593: IPR017871: IPR003439; KEGG: xce:Xcel_0700 ABC transporter; PFAM: ABC transporter; SMART: ATPase AAA; SPTR: ABC transporter ATP-binding protein; PFAM: ABC t

DNA sequence : 
ATGGGCACGCCCATGCTGGTGATGGAGAACGTGACGCGGGTGCACGGTTCTGGCGAGACTGAGGTCCGCGCCCTCGACGG
CGTGAGCCTCACGGTGTCCACGGGTGAGCTCGTGGCCGTGATGGGTCCGTCAGGGTCGGGCAAGTCCACCCTGCTCAATC
TCGCTGGCGGCCTCGACCGGGCCACCTCCGGCACGGTTCAGGTGGCCGGCACCGAGCTCGGGTCGCTCCGGGCGCATGAT
CTCGCCAAGCTGCGGCGACGCAAGGTCGGCTTCGTCTTCCAGGACCTCAACCTCATCCCCTCCCTGACCGCGGCGGAGAA
CATCGGCCTTCCGCTCGAGCTCGACGGTGACTCGGTGCGTCGCTCACGGCGCAACGCCCTGGACGCCCTCGACCAGCTGG
GGCTGCGCGAGCTCGCCGACCGCTACCCCGACCAGATGTCGGGCGGCCAGCAGCAGCGGGTGGCGATTGCCCGGGCGCTC
GTCGGGTCGCGCCGCCTCGTGCTCGCCGACGAGCCCACCGGTGCACTCGACTCCGTGACGGGCGAGGGGGTGCTCCGGGT
GCTGCGCTCTCGCGTGGATGCCGGCGCGGCGGGCCTCCTGGTCACTCACGAGGCGCGGCACGCGGCGTGGGCCGACCGGG
TCGTCTTCCTCCGCGACGGCCGCATCGTCGACACCACGGGTTCTCCTACAGAGCCCGAGGCGCTGCTCGACGGCGCGACG
ACCTGA

Protein sequence : 
MGTPMLVMENVTRVHGSGETEVRALDGVSLTVSTGELVAVMGPSGSGKSTLLNLAGGLDRATSGTVQVAGTELGSLRAHD
LAKLRRRKVGFVFQDLNLIPSLTAAENIGLPLELDGDSVRRSRRNALDALDQLGLRELADRYPDQMSGGQQQRVAIARAL
VGSRRLVLADEPTGALDSVTGEGVLRVLRSRVDAGAAGLLVTHEARHAAWADRVVFLRDGRIVDTTGSPTEPEALLDGAT
T

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-40 48
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-40 48
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-40 48
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-39 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Intca_2415 YP_004099649.1 ABC transporter NC_008702.1.4606598. Protein 2e-33 48
Intca_2415 YP_004099649.1 ABC transporter CP001581.1.gene598.p Protein 3e-39 45
Intca_2415 YP_004099649.1 ABC transporter NC_012469.1.7686878. Protein 5e-40 44
Intca_2415 YP_004099649.1 ABC transporter CP001581.1.gene798.p Protein 4e-38 42