Gene Information

Name : Intca_1862 (Intca_1862)
Accession : YP_004099100.1
Strain : Intrasporangium calvum DSM 43043
Genome accession: NC_014830
Putative virulence/resistance : Unknown
Product : pyridoxal phosphate synthase yaaD subunit
Function : -
COG functional category : H : Coenzyme transport and metabolism
COG ID : COG0214
EC number : -
Position : 2094491 - 2095411 bp
Length : 921 bp
Strand : -
Note : COGs: COG0214 pyridoxine biosynthesis enzyme; InterPro IPR001852; KEGG: kfl:Kfla_4427 pyridoxine biosynthesis protein; PFAM: Vitamin B6 biosynthesis protein; SPTR: pyridoxal biosynthesis lyase pdxS; TIGRFAM: pyridoxine biosynthesis protein; PFAM: SOR/SNZ

DNA sequence :
GTGAGCACACCCGAGACCCCGTCTCAGCCCCAGCCCGACAGCGCCACCGGCACGTCACCCGTCAAGCGGGGGATGGCCGA
GATGCTCAAGGGCGGCGTCATCATGGACGTCGTCAACGCCGAGCAGGCCAAGATCGCGGAGGACGCCGGCGCCGTCGCGG
TCATGGCCCTCGAGCGCGTTCCGGCCGACATCCGCGCCCAGGGCGGCGTGTCCCGGATGAGCGACCCCGACATGATCGAC
GGCATCATCTCCGCGGTGTCGATCCCCGTCATGGCCAAGGCCCGCATCGGTCACTTCGTCGAGGCCCAGGTGCTCCAGAG
CATGGGCGTCGACTACATCGACGAGTCAGAGGTCCTCACCCCCGCCGACTACGCCAACCACATCGACAAGTGGCAGTTCA
CCGTGCCCTTCGTCTGCGGGGCCACGAACCTCGGGGAGGCCCTGCGCCGGATCACCGAGGGCGCGGCGATGATCCGCTCC
AAGGGCGAGGCCGGCACCGGCGACGTGTCCAACGCGACGACGCACATGCGCCAGATCCGCGCCGAGCTCCGTCGCCTGCA
CAACCTCCCGGAGGACGAGCTGTACGTGGCCGCGAAGGAGCTGCAGGCGCCCTACGCGCTCGTCGCCGAGGTCGCCAAGG
CCGGCAAGCTGCCCGTCGTCCTCTTCACCGCGGGCGGCATCGCCACTCCGGCGGATGCGGCGATGATGATGCAGCTCGGC
GCCGAGGGTGTCTTCGTCGGCTCCGGCATCTTCAAGTCCGGCAACCCGGCCCAGCGCGCCGAGGCGATCGTCAAGGCGAC
GACCTTCTACGACGACCCCGACGTCATCGCCAAGGTCTCCCGTGGCCTCGGCGAGGCGATGGTTGGCATCAACGTCGACG
AGATCCCCCAGCCGCACCGGCTGGCCGAGCGCGGCTGGTGA

Protein sequence :
MSTPETPSQPQPDSATGTSPVKRGMAEMLKGGVIMDVVNAEQAKIAEDAGAVAVMALERVPADIRAQGGVSRMSDPDMID
GIISAVSIPVMAKARIGHFVEAQVLQSMGVDYIDESEVLTPADYANHIDKWQFTVPFVCGATNLGEALRRITEGAAMIRS
KGEAGTGDVSNATTHMRQIRAELRRLHNLPEDELYVAAKELQAPYALVAEVAKAGKLPVVLFTAGGIATPADAAMMMQLG
AEGVFVGSGIFKSGNPAQRAEAIVKATTFYDDPDVIAKVSRGLGEAMVGINVDEIPQPHRLAERGW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
DIP0227 NP_938620.1 pyridoxal biosynthesis lyase PdxS Not tested Not named Protein 6e-115 80
pdxS YP_005137204.1 pyridoxine biosynthesis protein Not tested Not named Protein 8e-115 80
pdxS YP_005141805.1 pyridoxine biosynthesis protein Not tested Not named Protein 8e-115 80