Gene Information

Name : Intca_1205 (Intca_1205)
Accession : YP_004098450.1
Strain : Intrasporangium calvum DSM 43043
Genome accession: NC_014830
Putative virulence/resistance : Virulence
Product : nucleotide sugar dehydrogenase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1004
EC number : 1.1.1.22
Position : 1343380 - 1344546 bp
Length : 1167 bp
Strand : +
Note : COGs: COG1004 UDP-glucose 6-dehydrogenase; InterPro IPR001732: IPR014026: IPR014027: IPR017476; KEGG: xce:Xcel_2850 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucos

DNA sequence :
GTGAAGATCGCAGTCGCGGGCCTCGGTTACGTGGGCCTCTCCAACGCCGTCGTCCTGGCCCAGCACAACGAGGTCGTCGC
CCTGGACCTGGACGCACGCCGGGTCGAGCTGGTCAACGCCCGCCGCTCGCCGATCGTTGACGCGGAGCTCGAGGAGTACC
TGGCTGAGCGCGAGCTCGACCTCCGGGCCACGGTCGAGCCCGCCGACGCGTACGAGGGTGCGACCTTCGTCATCGTGGCG
ACGCCGACCGACTACGACCCCCGGTCCAACTACTTCAACACGTCGTCGGTCGAGTCGGTCATCGCCGACGTCCGTCGCCT
CGCGCCGGGCGCGACCGTCGTCGTGAAGTCGACCGTTCCGGTCGGCTTCACCGAGCGGATCCGCACGGAGTACCCCGGCG
CGAAGGTGCTCTTCTCGCCGGAGTTCCTCCGCGAGGGACGAGCCCTGTGGGACAACCTGCACCCCAGCCGGATCATCGTC
GGGGACCTGTCGCCCGAGGCCAAGCAGTTCGCCGACCTCCTCGTCGAGGGGGCCGAGGACACCGACATCCCCGTCCTGCT
GACCAACCCGACCGAGGCGGAGGCGACCAAGCTGTTCGCCAACACCTACCTCGCGATGCGGGTCGCCTACTTCAACGAGC
TCGACACCTATGCCGCGATGCACGGTCTCGATGCGAGGTCGATCATCGAGGGCGTCGGGCTCGACCCGCGGATCGGGTCG
CACTACAACAACCCGTCGTTCGGCTACGGCGGCTACTGCCTGCCCAAGGACACCAAGCAGCTGCTGGCCAACTACGACCA
GGTGCCGCAGACGCTGATCCGGTCGATCGTGGACTCGAACACGACTCGGAAGGACTTCATCGCGAAGGACATCCTCCGGC
GGGAGCCGCGGGTGGTCGGGATGTACCGCCTCGTCATGAAGGAGGGTTCCGACAACTTCCGCAGCTCGAGCATCCAGGGG
ATCATGAAGCGGATCAAGGCCAAGGGCGTCGAGGTGATCGTCTACGAGCCATCCCTCCAGACCGACGACTTCTACCGCTC
ACGGGTGGTCCGCGACCTCGCGGCCTTCAAGGCCGAGGCAGACGTCATCGTCGCGAACCGCCACTCCGACGAGCTGGCGG
ACGTCGCCGCCAAGGTGTACACCCGCGACATCTACGGTCGCGACTGA

Protein sequence :
MKIAVAGLGYVGLSNAVVLAQHNEVVALDLDARRVELVNARRSPIVDAELEEYLAERELDLRATVEPADAYEGATFVIVA
TPTDYDPRSNYFNTSSVESVIADVRRLAPGATVVVKSTVPVGFTERIRTEYPGAKVLFSPEFLREGRALWDNLHPSRIIV
GDLSPEAKQFADLLVEGAEDTDIPVLLTNPTEAEATKLFANTYLAMRVAYFNELDTYAAMHGLDARSIIEGVGLDPRIGS
HYNNPSFGYGGYCLPKDTKQLLANYDQVPQTLIRSIVDSNTTRKDFIAKDILRREPRVVGMYRLVMKEGSDNFRSSSIQG
IMKRIKAKGVEVIVYEPSLQTDDFYRSRVVRDLAAFKAEADVIVANRHSDELADVAAKVYTRDIYGRD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0068 YP_300158.1 UDP-glucose 6-dehydrogenase Not tested SCC15305cap Protein 1e-89 57

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Intca_1205 YP_004098450.1 nucleotide sugar dehydrogenase VFG0963 Protein 2e-92 52