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Name : Ethha_0476 (Ethha_0476) Accession : YP_004090792.1 Strain : Ethanoligenens harbinense YUAN-3 Genome accession: NC_014828 Putative virulence/resistance : Unknown Product : HsdR family type I site-specific deoxyribonuclease Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 511139 - 514156 bp Length : 3018 bp Strand : + Note : TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; KEGG: clo:HMPREF0868_0494 type I site-specific deoxyribonuclease, HsdR family; SMART: DEAD-like helicase DNA sequence : ATGCCTTATGCCGAAGCCAATTTTGAAAATGCCGTTATGATTTTACTGGAAGAGCTGGGGTACGCTAAGCTCTATGGCCC GGATGTAGAACGGGATTTTCATAACCCGCTTTACTTGGATGCGCTCACTGGACAGCTTCCCCGCATTAACCCGATGGCTG ATCGGCAGGCGGTGGAAGAGGCCCTTCACAAGCTGACGCATATCGAGCATGGTACACTTCTACAGAAAAATAAGCGGTTT ATGGATTGGCTGCAAAATGGCATAGAGGTTACTTACCAAAAGGGCGGAGAAACGAAAAACGAGCTTGTCCGTTTAATAGA CTACGAACACCCGGAATACAATATGTTCTGCGCCATCAACCAGTGGACGATAACGGAACATGAGACGAAACGGCCAGATG TGGCGGTTTTTGTCAACGGCTTGCCTCTTGTGGTAGTGGAATTAAAAACCTGTATGCGCGAAGATACCGATTTTTCCGAC GGCTACCGGCAGATCAAAAACTATATGAAAGAGATCCCGGTACTGTTTCAATATAACGCTTTCTGTATCATAAGCGACCT GATCGATTCCAAAGTGGGAACGATCACCTCGGAGTTTGACCGGTTTGTGGACTGGAAAACGGTGAACGGCGATTATGAAG AAACACAATTCGCCCGTTATGACGTGCTCTTTCGCGGAATGCTGGAGCCAAGGCGTTTTCTGGACATCCTGCGGTACTTT ATTCTCTTTTCACAGGATATACCGGAAGATCACAAAATACTGGCAGGCTACCACCAGTATTTTGCAGTACGTAAAGCCAT TGAATCAACTCGCCATGCGGTGGAGACTGACGGTAAGGGCGGCGTGTTCTGGCACACTCAGGGTAGCGGTAAAAGCCTTT CGATGGTGTTCTACGCCGCACTGCTCCAGCAGGCGCTGGACAGCCCCACCATTATTGTCATTACTGATCGAAACGATTTG GACGATCAACTCTATGGACAATTTTCTGCCTGCAAAGATTTTTTGCGCCAGACGCCGGAGCACGCTCAAAGCCGCGAACA TTTGAAAGAACTGTTGGCCGGGCGGCGAGCCAACGGTATCTTTTTTACCACCATGCAGAAGTTTGAAGAGGCTCACGAAC CGCTGAGTGAACGACGCAACATCATTGTGATGGCGGATGAAGCTCATCGCAGCCAATATGGCCTAACAGAGCGCGTGAAA AAGGATGGAACGTTAGTTGTCGGCGCAGCGCGCGTTATCCGCGATAGCTTGCCGGATGCAACGTTCATTGGGTTCACAGG TACGCCGATTTCTTCTAAAGATCGCGACACGCGTGCGGTTTTTGGCGATTACATTGATATTTATGATATGACGCAGGCTG TAGAAGATGGCGCGACGCGCCCTGTTTATTATGAAAGCCGCGTGATGAACCTCGGCCTGAAGGAGGATGTCCTTCGTCAA ATTGATACGACCTATGAACTGCTGGCACAAAACGCAAACGAGCAGGACATTGAACGCAGTAAAAAAGAGTTGGGTAATCT GGAAGCCATCCTTTCTGCACCTGAAACCATTGATACGCTTTGCCGTGACATCATCGCACACTATGAGCAAAACCGCGAGC ACTTGCTTACCGGCAAGGCGATGATCGTCGCCTATTCCCGCTCAATTGCCATTGATATCTATCATAAGCTATTGGAATTA CGGCCGGGTTGGCAGAAAAAGGTCAAGGTGGTCATGACATCCGGAAATAACGACCCGGAAGAGTGGCGGAACATTATTGG CAATAAAAGCTATAAAAGAGAGCTGGCGCGCAAGTTTAAGGACAATGACGATTCGCTAAAAATTGCGATTGTGGTGGATA TGTGGCTCACCGGATTCGATGTCCCCAGCCTTGCCACAATGTACGTCTACAAACCCATGAGTGGTCATAACCTGATGCAG GCCATTGCGCGTGTCAACCGCGTTTTTCGAGATAAAGAGGGCGGGCTCGTAGTCGATTATATTGGGATTGCCCGTGCACT CAAGCGGGCAATGAATGATTACACCGTGCGCGACCGCAGTAATTACGGCAACTTGGATATTGCCAAAACTGCGCTGCCAA AGTTCGAGGAAAAGCTGCGCGTTTGTGGAGAGCTGCTGTACGGGTTTGATTATTCTGCATTTCTGCTTGAGACGAGCAAT GACCGCCAGCGCGCTGATCTGATTGCGGGCTGCATTAATTTTGTTTTGGGTAAGAACGCAGATACGCAAAAGACGTTTGC AACAGAAGCATTGCTACTCAAACAGGCGCGTACACTTTGCCAGAGCCTGCTGAATCGGGAGCAGCGCATGGAATCTGCGT TGTTTGAAGCTGTGCGCGTTGCGTTAAGTCGCATTTCCGGCACCCAAAAGTTGTCGCTGAAAGAGATCAACGACCGCATC AATGAGATGTTGCAACAAAGTGTGCATAGCGAGGGCGTTATCAATCTGTTTGGAGAGCAAAGCGCGGAATTTTCATTGTT TGATCCAGCTTTTTTGGAAGAAATCAGCCGAATGAAGCAGAAAAATTTGGCTGCGGAGCTCTTGCGCAAGCTACTGGCGG AGCAGATCTCCGCATATCAGCATACCAACTTGGTTCAGGCTGAAAAATTCTCTGACCGCATGCAGAAACTCATGAACGCC TATCGCAATGGACAAATTACCAATGCCGAAGTAATTGAAGAGTTACAAAAGATGGCAGCAGACATTGCAAAAGCGCACCA AACCGGCGCATCGCTGGGCCTATCGCCGGAGGAACTGGCATTCTACGACGCCATTACCCGTCCAGAAGCAGTAAAAGATT TTTATACCAACGACCAGTTGCTGCATATGACCAAAGAATTAGCAGATACACTGCGCCGCAGTCGAACCGTTGACTGGCAG AAAAAAGAGAGCGCCCGTGCCCAAATGCGTGTGATGGTTAAGCGTCTGTTACGCAAATATAAATATCCCCCCGATGGGAT GCAGGATGCGATTCAGACTGTGCTGGCGCAGTGCGAGCTATGGACAGATGAAGCATAG Protein sequence : MPYAEANFENAVMILLEELGYAKLYGPDVERDFHNPLYLDALTGQLPRINPMADRQAVEEALHKLTHIEHGTLLQKNKRF MDWLQNGIEVTYQKGGETKNELVRLIDYEHPEYNMFCAINQWTITEHETKRPDVAVFVNGLPLVVVELKTCMREDTDFSD GYRQIKNYMKEIPVLFQYNAFCIISDLIDSKVGTITSEFDRFVDWKTVNGDYEETQFARYDVLFRGMLEPRRFLDILRYF ILFSQDIPEDHKILAGYHQYFAVRKAIESTRHAVETDGKGGVFWHTQGSGKSLSMVFYAALLQQALDSPTIIVITDRNDL DDQLYGQFSACKDFLRQTPEHAQSREHLKELLAGRRANGIFFTTMQKFEEAHEPLSERRNIIVMADEAHRSQYGLTERVK KDGTLVVGAARVIRDSLPDATFIGFTGTPISSKDRDTRAVFGDYIDIYDMTQAVEDGATRPVYYESRVMNLGLKEDVLRQ IDTTYELLAQNANEQDIERSKKELGNLEAILSAPETIDTLCRDIIAHYEQNREHLLTGKAMIVAYSRSIAIDIYHKLLEL RPGWQKKVKVVMTSGNNDPEEWRNIIGNKSYKRELARKFKDNDDSLKIAIVVDMWLTGFDVPSLATMYVYKPMSGHNLMQ AIARVNRVFRDKEGGLVVDYIGIARALKRAMNDYTVRDRSNYGNLDIAKTALPKFEEKLRVCGELLYGFDYSAFLLETSN DRQRADLIAGCINFVLGKNADTQKTFATEALLLKQARTLCQSLLNREQRMESALFEAVRVALSRISGTQKLSLKEINDRI NEMLQQSVHSEGVINLFGEQSAEFSLFDPAFLEEISRMKQKNLAAELLRKLLAEQISAYQHTNLVQAEKFSDRMQKLMNA YRNGQITNAEVIEELQKMAADIAKAHQTGASLGLSPEELAFYDAITRPEAVKDFYTNDQLLHMTKELADTLRRSRTVDWQ KKESARAQMRVMVKRLLRKYKYPPDGMQDAIQTVLAQCELWTDEA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 42 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 42 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 42 |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 7e-172 | 41 |
