Gene Information

Name : Ethha_2563 (Ethha_2563)
Accession : YP_004092787.1
Strain : Ethanoligenens harbinense YUAN-3
Genome accession: NC_014828
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 2746318 - 2747121 bp
Length : 804 bp
Strand : -
Note : KEGG: aoe:Clos_1497 flagellar biosynthetic protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein

DNA sequence : 
ATGATCAATCTCATTAAGCGGGCGGTCCGCACGATAGGCAGGCACGGGCGGAAACTGTTTCGCATTGCCGCAGCCTCGGC
GGTGTTCTGCATCGTGTTCTCCGTCGGCTTTGCCGTTTCGGCGGCCAGCAGCGATCCGGGCATCTCGCTGACGCTCAACG
GCCTGACCACCCCGTCTGGCACCGCCAACACCCTTCAGATTTTGCTGCTGCTCACACTGATCGCGCTGGCCCCGTCCATC
CTCATCATGATGACGTCCTTTACACGCATCATCATTTTCCTGTCGTTTCTGCGCAACGCGCTGGGCACCCAGCAAACACC
GCCCAATCAGGTGCTGGTGGGCATCGCGCTGTTCCTGTCGCTGTTCATTATGTCGCCGGTTATCAACCAGATCAACACCA
CGGCCTACCAGCCGCTGGTAAACGGGCAGATCACCACCGAGCAGGCCGAAGTGAACGCCATGAAGCCGCTGCGGCAGTTC
ATGTTCAAGCAGACGGAGAACGCCAGCCTGAAAACCTTTCTGAGCATGGCGGGCACGCCCACCGTCAAATCGCTGGACAA
CATCCCCAACAGCGTGCTCATCCCGGCATTTGTCATCAGCGAGCTCAAACGGGCGTTCATGATGGGCTTCCTCATCTATC
TGCCGTTTTTGATCATTGACGTGATCGTGGGCACCACGCTGATGTCGATGGGCATGATGATGCTGCCGCCGACCATGATC
TCCCTGCCGCTCAAGCTGGCGCTCTTTGTGCTGGTGGACGGCTGGGGCCTTACGGTGCAGTCGCTGGTGTACAGCTTCAA
ATAA

Protein sequence : 
MINLIKRAVRTIGRHGRKLFRIAAASAVFCIVFSVGFAVSAASSDPGISLTLNGLTTPSGTANTLQILLLLTLIALAPSI
LIMMTSFTRIIIFLSFLRNALGTQQTPPNQVLVGIALFLSLFIMSPVINQINTTAYQPLVNGQITTEQAEVNAMKPLRQF
MFKQTENASLKTFLSMAGTPTVKSLDNIPNSVLIPAFVISELKRAFMMGFLIYLPFLIIDVIVGTTLMSMGMMMLPPTMI
SLPLKLALFVLVDGWGLTVQSLVYSFK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 1e-22 44
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 1e-22 44
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 9e-23 44
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 2e-22 44
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 2e-22 44
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 1e-17 42
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 8e-18 42
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 1e-16 41
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 1e-16 41
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 4e-20 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ethha_2563 YP_004092787.1 flagellar biosynthetic protein FliP VFG0044 Protein 1e-27 44
Ethha_2563 YP_004092787.1 flagellar biosynthetic protein FliP VFG0519 Protein 5e-23 44
Ethha_2563 YP_004092787.1 flagellar biosynthetic protein FliP VFG0188 Protein 1e-23 43