|
Name : Ethha_1903 (Ethha_1903) Accession : YP_004092156.1 Strain : Ethanoligenens harbinense YUAN-3 Genome accession: NC_014828 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : - Position : 2032930 - 2034990 bp Length : 2061 bp Strand : + Note : TIGRFAM: DNA topoisomerase III; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein; KEGG: efa:EF2312 DNA topoisomerase III; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain-co DNA sequence : ATGCGGTTTGTAATCAGTGAAAAGCCCTCGGTTGCCCAAAGCATCGCCGCCGTAATCGGCGCGAAGCAGCGCGGCGACGG GTTTCTGGAGGGTAACGGCTACCTCGTTTCATGGTGCCTCGGCCATCTGGCGGAGCTGGCAAGCGCCGACGCCTACGATG AAAAATACGCCAAGTGGCGGCGCGAGGATTTGCCCATTCTGCCGGAGAACTGGCGGTTTACCGTAAGCGGGGACAAACAA AAGCAGTTTGCTATTCTCCGCACCCTGATGCGCCGCGACGATGTGGATGAAGTCATCAACGCCTGCGATGCTGGACGCGA GGGCGAACTGATCTTCCGCACCGTGTACGATATGGCAGGCTGCTCCAAACCGATGAAACGGCTCTGGATTTCCTCAATGG AGGATGAAGCCATCCGACAGGGCTTTGCCGATCTGAAACCGGGGCGGGACTATGACGGGCTGCATCAGTCCGCTCTCTGC CGCTCCAAAGCCGACTGGCTGGTGGGCATCAACGCGACGCGCCTGTTTTCGGCCCTCTACCACCGAACTCTGAATGTCGG GCGCGTCATGTCTCCGACTCTGGCGCTCCTTGTGCAGCGGGAAGCGGAGATTTCCGCGTTTCAGCCGGAGCCATTCTATA CGGTCAGCCTCGACTGCGGCACCTTTACCGCCATCGGCGACAAGCTGAAAACAAAGTCGGAGGCCGAGGCTGTTGCCGCC GCCTGCAAAGGGAAAACGGCCACCGTCAGGGCCGTGGAGCGGAAAGAAAAATCTGAGAAGCCGCCCGCGCTCTACGATTT GACTACTCTCCAGCGCGACGCCAACCGACTGCTCGGCTACACGGCCCAGCAGACGCTGGACTATCTGCAATCGCTCTATG AAAAAAAGCTCTGCACCTACCCCCGCACCGACAGCCGGTTTCTGACGAACGACATGAAAGCCTCCGTTCCGGCGTTTGCT TCCGTCGCCGCCGCAATCTGCGGTACGGACGTTCCCGAAAGCCTCAACGCCGGTCAGGTCTGCGACAGCGCGAAGGTCAG CGACCATCACGCCGTCGTTCCCACGTCCGGCGCGGGCAAAGCGGATGTTTCCGCGCTGCCTGCCGGGGAGCGTGAAATTC TGCGGCTCGTTTCACGGCAGCTTCTCTGCGCGGTCGGCAGTCCGCACCAATACGCCGAAACCGCCGTCACGCTGGACTGC ACCGGGTATGGATTTGCCGCCAAGGGCAAAACGGTTCTCGTTCCCGGCTGGAAATCCTGTTTTCAGGAACAGGCCGACAA ACCACTGCCGGAACTGGCAGAGGGTCAGGACATCGCTGTTGCCTCTGTTTCCGTCAAGGAGGGAAAAACCTCGCCGCCCA AGCATTATACGGAAGATACCTTGCTTTCCGCGATGGAGACGGCGGGCGCGAAGGATATGCCGGATGATGCGGAAAGAAAA GGTTTGGGCACCCCCGCCACCCGCGCGGCCATTTTGGAAAAGCTCGTTACTACCGGATTTGTGGAACGGAAAAAGGCCAA GAAAACCGTCAACCTCATCCCGTCTCAGGTCGGCGTGTCGCTCGTCACCGTTCTGCCGGAGCAGCTTCAATCCCCGCTGC TGACCGCCGAATGGGAAAACCGGCTCAAGCAGGTGGAGCACGGAAAACTGGAACCGGACGCTTTTATGAACGGGATTTCA TCCATGCTCCGGGAGCTTATAAAAACCTATACGCCGGTCAAGGGCGCGGAGGTGCTGTTCCCCTCCGGGCGTGAGGCAGT CGGCAAATGCCCCCGCTGCGGCGGCAGCGTGACCGAGAGCAAAAAGGGATTCTTTTGCGAAAACGACGGTTGCCGCTTCG GGCTTTGGAAGGACAACCGGTTTTTCGCCGCCAAGAAAAAGGTCCTGACGAAAGCTGTCGCCGCAGCGTTCCTAAAGGAT GGGCGCGTAAGGCTCACCGGATGTTATTCCGAAAAGACCGGCAAAACTTACGACGCCACGGTGATTTTGGAGGACACCGG GGGGCGCGTCAATTTTAAGCTGGAATTTGATTCGGGGACGAAAAAGCGTGGCGGATCATGA Protein sequence : MRFVISEKPSVAQSIAAVIGAKQRGDGFLEGNGYLVSWCLGHLAELASADAYDEKYAKWRREDLPILPENWRFTVSGDKQ KQFAILRTLMRRDDVDEVINACDAGREGELIFRTVYDMAGCSKPMKRLWISSMEDEAIRQGFADLKPGRDYDGLHQSALC RSKADWLVGINATRLFSALYHRTLNVGRVMSPTLALLVQREAEISAFQPEPFYTVSLDCGTFTAIGDKLKTKSEAEAVAA ACKGKTATVRAVERKEKSEKPPALYDLTTLQRDANRLLGYTAQQTLDYLQSLYEKKLCTYPRTDSRFLTNDMKASVPAFA SVAAAICGTDVPESLNAGQVCDSAKVSDHHAVVPTSGAGKADVSALPAGEREILRLVSRQLLCAVGSPHQYAETAVTLDC TGYGFAAKGKTVLVPGWKSCFQEQADKPLPELAEGQDIAVASVSVKEGKTSPPKHYTEDTLLSAMETAGAKDMPDDAERK GLGTPATRAAILEKLVTTGFVERKKAKKTVNLIPSQVGVSLVTVLPEQLQSPLLTAEWENRLKQVEHGKLEPDAFMNGIS SMLRELIKTYTPVKGAEVLFPSGREAVGKCPRCGGSVTESKKGFFCENDGCRFGLWKDNRFFAAKKKVLTKAVAAAFLKD GRVRLTGCYSEKTGKTYDATVILEDTGGRVNFKLEFDSGTKKRGGS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB-2 | NP_815968.1 | DNA topoisomerase III | Not tested | Not named | Protein | 0.0 | 57 |
| EFAU085_00720 | YP_008394244.1 | DNA topoisomerase III | Not tested | Not named | Protein | 3e-176 | 55 |
