Gene Information

Name : Astex_2019 (Astex_2019)
Accession : YP_004087832.1
Strain :
Genome accession: NC_014816
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2171417 - 2172097 bp
Length : 681 bp
Strand : -
Note : KEGG: cak:Caul_3896 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; transcriptional regulator domain-containing protein

DNA sequence : 
ATGCGCATTCTGCTTGCTGAAGATGATCCCGACCTGTCGCGTCAGCTCAAGGCCTCACTTCAGGATGCCGGCTATGTGGT
CGATCATGCCCCCGACGGTGAAGAAGCCCACTTTCTGGGCGATACCGAGCCATACGACTGCGTGATCCTTGACTTGGGCC
TGCCTAAGATTGATGGCGTGTCGGTGCTTGAAAGATGGCGTCGCGATGGCAAAGCAACGCCGGTTTTGATCCTCACGGCG
CGGGGTGCATGGTCTGACAAGGTGTCCGGTTTTGACGCTGGAGCCGACGATTATCTGACGAAGCCCTTTCATACCGAGGA
ATTGCTGGCGCGTTTGCGCGCATTGGTCCGCCGCGCCGCCGGTCATGCGCAACCGCTTCTCGTCTGTGGCGGGGTGCGCC
TTGATCCGCGCGCCGCGCGCGCTTCGGTGAACGGTGAGCCCCTGCGCCTGACCTCTCTGGAATATCGTCTGCTGCATTAT
ATGATGCTGCACCAGAGCCGCGTCATTTCGCGTACTGAGCTGGTTGAACACCTCTATGATCAGGACTTTGACCGCGATTC
CAACACCATCGAAGTGTTTATGGGCCGTCTGCGCAAGAAGATAGGTACTGAGCGCATCGAGACCGTGCGCGGGCTCGGAT
ATCGCCTCAAGCCGCTGCACGATGAAGTCAGCCAGATTTAG

Protein sequence : 
MRILLAEDDPDLSRQLKASLQDAGYVVDHAPDGEEAHFLGDTEPYDCVILDLGLPKIDGVSVLERWRRDGKATPVLILTA
RGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALVRRAAGHAQPLLVCGGVRLDPRAARASVNGEPLRLTSLEYRLLHY
MMLHQSRVISRTELVEHLYDQDFDRDSNTIEVFMGRLRKKIGTERIETVRGLGYRLKPLHDEVSQI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-26 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Astex_2019 YP_004087832.1 winged helix family two component transcriptional regulator CP004022.1.gene1005. Protein 3e-39 46
Astex_2019 YP_004087832.1 winged helix family two component transcriptional regulator CP000647.1.gene1136. Protein 2e-35 46
Astex_2019 YP_004087832.1 winged helix family two component transcriptional regulator NC_002516.2.879194.p Protein 2e-36 46
Astex_2019 YP_004087832.1 winged helix family two component transcriptional regulator BAC0530 Protein 2e-35 46
Astex_2019 YP_004087832.1 winged helix family two component transcriptional regulator CP000034.1.gene2022. Protein 4e-35 45
Astex_2019 YP_004087832.1 winged helix family two component transcriptional regulator CP001918.1.gene2526. Protein 2e-34 45
Astex_2019 YP_004087832.1 winged helix family two component transcriptional regulator NC_002695.1.913289.p Protein 2e-34 45
Astex_2019 YP_004087832.1 winged helix family two component transcriptional regulator CP001138.1.gene1939. Protein 4e-35 45
Astex_2019 YP_004087832.1 winged helix family two component transcriptional regulator BAC0487 Protein 5e-27 42
Astex_2019 YP_004087832.1 winged helix family two component transcriptional regulator BAC0347 Protein 4e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Astex_2019 YP_004087832.1 winged helix family two component transcriptional regulator VFG0475 Protein 4e-35 45
Astex_2019 YP_004087832.1 winged helix family two component transcriptional regulator VFG0473 Protein 2e-27 42