Gene Information

Name : Astex_1423 (Astex_1423)
Accession : YP_004087242.1
Strain :
Genome accession: NC_014816
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein flip
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1537721 - 1538527 bp
Length : 807 bp
Strand : +
Note : KEGG: pzu:PHZ_c0922 flagellar biosynthesis protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein

DNA sequence :
ATGCGGATGCCCGACCTTTTTCGTCAGTTCGGCAAACCGATGCGCAAACGCGACTATGCCGTGACCCTGCTGGGGGGCAT
TCTCGGTTTTGCCCTGATGATCTTCCCCGGCGACGTGCTGGCGCAGTCGGTCAATCTCGACCTCGGGCAAGGCGGCACGC
TAACGGCGCGCGTCGTGCAGATGCTGGGGCTTTTGACCGTCCTGTCGCTGGCGCCGTCCATCGTCATTATGACCACCTCC
TTCATCCGCATCGTGGTGGTGCTATCCCTGCTCAGAACCGCGCTCGGCCTGCAACAAAGCCCCCCCAATGCGGTTCTGAT
CTCGCTGGCCATGTTCCTGTCGGCGGTGGTAATGGCCCCCACCTATCAGGCGGCCTATGACGCCGGCATCCGGCCGCTGA
TGGATCAGGAGATGGAGATGCCGCAGGCCTTTGATGCGGCCTCCGAACCGGTCAAGACCTTCATGCTGTCTCAGGTTGAT
GCCGGGGATCTCAACCTGTTTATACGCTTGTCTAAGGTTGAAAAGCCCAAGGACAATATGGACCTGCCGATCACGGTCAT
CACTCCGGCCTTTATGATCTCGGAGCTAAAGACGGCGTTCCTGATCGGGTTTCTCCTGTTTATCCCGTTTCTGGTGATCG
ATCTGGTGGTCGCCTCAGTGCTAATGAGTATGGGGATGATGATGCTGCCGCCAGTGGTGGTGTCGCTGCCGTTCAAGCTG
ATCTTCTTCGTTCTGGTCGATGGCTGGCGGCTGGTGTGCGGCTCATTGGTCGAAAGTTTCACCAAGGCAGGCGGCGCGGG
GGGATAG

Protein sequence :
MRMPDLFRQFGKPMRKRDYAVTLLGGILGFALMIFPGDVLAQSVNLDLGQGGTLTARVVQMLGLLTVLSLAPSIVIMTTS
FIRIVVVLSLLRTALGLQQSPPNAVLISLAMFLSAVVMAPTYQAAYDAGIRPLMDQEMEMPQAFDAASEPVKTFMLSQVD
AGDLNLFIRLSKVEKPKDNMDLPITVITPAFMISELKTAFLIGFLLFIPFLVIDLVVASVLMSMGMMMLPPVVVSLPFKL
IFFVLVDGWRLVCGSLVESFTKAGGAGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 1e-20 42
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 2e-20 41
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 1e-20 41
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 2e-20 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 2e-20 41
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 4e-21 41
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 4e-21 41
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Astex_1423 YP_004087242.1 flagellar biosynthetic protein flip VFG2494 Protein 2e-42 52
Astex_1423 YP_004087242.1 flagellar biosynthetic protein flip VFG1259 Protein 2e-42 50
Astex_1423 YP_004087242.1 flagellar biosynthetic protein flip VFG2338 Protein 9e-40 48
Astex_1423 YP_004087242.1 flagellar biosynthetic protein flip VFG2016 Protein 4e-39 46
Astex_1423 YP_004087242.1 flagellar biosynthetic protein flip VFG0044 Protein 2e-25 44
Astex_1423 YP_004087242.1 flagellar biosynthetic protein flip VFG0394 Protein 4e-23 43