Gene Information

Name : Mspyr1_52630 (Mspyr1_52630)
Accession : YP_004079623.1
Strain : Mycobacterium gilvum Spyr1
Genome accession: NC_014814
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 5447794 - 5448696 bp
Length : 903 bp
Strand : -
Note : PFAM: Integrase core domain

DNA sequence :
GTGCTCTCCGAGCACGGCTGCCAGATTGCCCCGAGAACCTTTTACGCCTGGCTGGCCCGCCCACCTTCGGCGCGAGCCCT
GTGGGACACCGTCATCACCGAGATCCTGGCCGGCTTCTACGAGCCTGACGAGCACGGCCGCCGCAAACCCGAGTCTCTCT
ACGGCGCCACCAAGATGTGGGCTCACCTGCAGCGCCAAGGCATCGCAGTGGCCCGCTGCACCGTCGAACGCCTCATGCGC
GCCAACGGCTGGCGTGGAGTCACCCGACGTAAGAAGGTCCACACCACGATCGCTGATCCGGCTGCAGGCCGGGCTCCGGA
CCTGGTGGACCGCCAGTTCCGGGTCCCGGCTCCCAACGTGCTACTCGTCGCTGACTTCACCTATGTGCGGCTGGCCAGCG
GGGTGTTTGTCTACACCGCGTTCGCCATCGACGCCTACGCCGGACGGATCGTGGGCTGGACCTGTTCAGCCGGCAAGAGT
GACGCGTTCGTACGACAAGCGATCCGCCACGCCGCACAACTCCGACTTAACGAAGGTAATCCGTTGTCGGGAAATACTAT
TCATCACAGCGACGCGGGCTCGCAATACACGTCTCTGCGGTTCGGGGAAACCTTGGCCCTGTCGGGTCTGGTGGCCTCGA
TCGGCACGGTTGGGGACGCCTTCGACAACGCTCTGGCCGAGACGACCATAGGGCTGTACAAGACCGAAGCCGTCCGGGAC
GACTCACCGTTTCGGCGGGGCCCACTGCACCGCCTGACCGATGTCGAACTGCTCACCGCCGAGTGGGTGCACTGGTACAA
CACCGACCGACTCATGCACCGTCTGGGCCGCATCCCACCCATCGAGTACGAGACCGTCTACTACGCTACAAACACAGCCC
GATCAGAGGCTGCACACCAGTAA

Protein sequence :
MLSEHGCQIAPRTFYAWLARPPSARALWDTVITEILAGFYEPDEHGRRKPESLYGATKMWAHLQRQGIAVARCTVERLMR
ANGWRGVTRRKKVHTTIADPAAGRAPDLVDRQFRVPAPNVLLVADFTYVRLASGVFVYTAFAIDAYAGRIVGWTCSAGKS
DAFVRQAIRHAAQLRLNEGNPLSGNTIHHSDAGSQYTSLRFGETLALSGLVASIGTVGDAFDNALAETTIGLYKTEAVRD
DSPFRRGPLHRLTDVELLTAEWVHWYNTDRLMHRLGRIPPIEYETVYYATNTARSEAAHQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 8e-37 49
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 4e-37 49
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 4e-42 49
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 4e-42 49
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 1e-42 48
Z1198 NP_286733.1 transposase Not tested TAI Protein 2e-41 48
Z1638 NP_287141.1 transposase Not tested TAI Protein 2e-41 48
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 1e-41 48
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 1e-40 48
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 1e-41 48
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 3e-41 48
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 3e-41 48
Z1221 NP_286756.1 transposase Not tested TAI Protein 7e-42 48
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 3e-41 48
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 7e-42 48
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 1e-41 48
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 4e-42 48
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 3e-42 48
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-41 47
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 8e-39 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mspyr1_52630 YP_004079623.1 transposase VFG1602 Protein 4e-39 46