Gene Information

Name : Mspyr1_41330 (Mspyr1_41330)
Accession : YP_004078542.1
Strain : Mycobacterium gilvum Spyr1
Genome accession: NC_014814
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 4281923 - 4282876 bp
Length : 954 bp
Strand : -
Note : PFAM: Integrase core domain

DNA sequence :
GTGGAGTTCATCAGCGCCCACCAGCACATGCGGGTGGGTGTTGATGGTCTCAAGTGGGGTGTCGAGTCGATGTGCGCCGT
GCTTTCCGAGTTCGGCGTCACGATCGCCCCGTCGACGTATTACGCCCACCGCGCCCGTCGGGGGCCCTCGCAGGCCGATT
GGGCCGACGCGCGGGTGATTGACGCGATCTGGCAGCTTCGCCGGTCCCAGAGGTTGTACCGGGTGCTGGGTGCTCGCAAG
ACATGGATTGTGTTGCGTACTAACGGTATCGATGTGTCTCGCTGCGTCGTGGAGCGGGTCATGCGGGAGATGGGTTGGCG
GGGTGCGTGCAAGCGGCGTCGGGTGCGCACCACCGTCGCTGATCCTGCCGCGACACGGGCACCGGACCGCGTGGCTCGGC
GGTTTGTCGCCGAGGCTCCCGACCGATTGTGGGTGGCCGATTTTACTTATTGCCGGACCGGCGCCGGCTGGGCCTACACG
GCGTTCGTCACCGATGTCTATGCCCGCAAGATTGTGGGGTGGAAGGTGGCTACCGAGATGACTCAGAAGCTGGTGACCGA
TGCGATCAACCATGCTATTGATACCAGAAAGCGTTCGGGTGCAACGTCTTTGGAGTCACTTGTCCATCACAGCGACGCGG
GCTCGCAATACACAGCGGTCGCGTTCACCGAACGTCTTGCCGCTGAAGGGATCCTGCCTTCAGTCGGTTCGGTGGGCGAT
AGTTTCGACAACGCTCTGGCCGAATCGGTGAACAGCAGCTACAAGACCGAACTCATCGACCACCAACCGCCGTATCCCGG
TGCCACCGAGTTGTCGCTGGGAACGGCCGAATGGGTGGCGTTCTACAACCGTGAACGGCCGAATGGCTACTGCCAGGACC
TGACCCCGGACAGGGCCGAAGCCCTCTACTACCATCGCCAGCGGCACCCTCACACCGAGGAGGCACTCAAATAA

Protein sequence :
MEFISAHQHMRVGVDGLKWGVESMCAVLSEFGVTIAPSTYYAHRARRGPSQADWADARVIDAIWQLRRSQRLYRVLGARK
TWIVLRTNGIDVSRCVVERVMREMGWRGACKRRRVRTTVADPAATRAPDRVARRFVAEAPDRLWVADFTYCRTGAGWAYT
AFVTDVYARKIVGWKVATEMTQKLVTDAINHAIDTRKRSGATSLESLVHHSDAGSQYTAVAFTERLAAEGILPSVGSVGD
SFDNALAESVNSSYKTELIDHQPPYPGATELSLGTAEWVAFYNRERPNGYCQDLTPDRAEALYYHRQRHPHTEEALK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 6e-40 47
Z1221 NP_286756.1 transposase Not tested TAI Protein 1e-43 45
Z1198 NP_286733.1 transposase Not tested TAI Protein 5e-43 45
Z1638 NP_287141.1 transposase Not tested TAI Protein 5e-43 45
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 1e-43 45
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 6e-43 45
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 6e-44 45
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 6e-44 45
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 3e-41 44
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 6e-41 44
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 3e-41 44
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 6e-41 44
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 6e-41 44
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 1e-42 44
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 2e-42 44
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-43 44
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 3e-43 44
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 8e-41 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mspyr1_41330 YP_004078542.1 transposase VFG1602 Protein 5e-41 43