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Name : Mspyr1_28860 (Mspyr1_28860) Accession : YP_004077343.1 Strain : Mycobacterium gilvum Spyr1 Genome accession: NC_014814 Putative virulence/resistance : Unknown Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 2992940 - 2996245 bp Length : 3306 bp Strand : + Note : PFAM: tRNA synthetases class II (D, K and N); conserved protein (DUF2156); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial DNA sequence : ATGACCGCAACCCGCCTCGTCAGGGCGCATCCCGAGTCCAGTCACCGGTGGGTGCCCGCGGCGGCCGGCTGGATCGTGGG TGTGATCGCCACGTTGTCCCTGCTGGCGAGCGTGTCACCGCTGGTCCGCTCGATCATCCGCGTTCCCCGCGAGTTCGTCG ACGACTACATCTTCAACTTCCCGGACACGAGCTTCGCGTGGGCGTTCGTGCTGGCGCTGCTCGCGGCCGCGCTCGCTGCC CGCAAACGCATCGCCTGGTGGATCCTGACCGGCTACATGGTGGCCGCGGCCGTCTGGAACGTCACCGGACTGCTCGACGG TGACCGGTGGTTCGAGGACGTCGGCGAGATCATCGGCCTGGGCTTCCACCTCGCCGCCATCGCGTCTCTGCTGTTGGCCC GCAGGGAATTCTGGGCCCGGGTGCGCCCGGGCGCGCTCGTCAAGGCGGCAGTCACCCTGGTCGCGGGCCTGGCCGTCGGC ACGCTGATCGGCTGGGGTCTGCTCAAATTGTTCCCCGGCACCCTGGCCCGGCCTGATCGCTTCTGGTACGCGCTCAACCG GGTCGGCGCCTTCGCGGGGGCGGATGCCGGCGCGTTCTCCGGCCACCCGCACGTGCTGGTCAACGCCCTCCTCGGCCTGT TCGGCGCGATGGCCCTGATGATCGCGGCGGTCGTGCTGTTCCAGTCACAGCGTGCGGACAACGCGCTGACCGGTGAGGAC GAATCCGCCATCCGCGGTCTGCTGGAGCTGTACGGGAAGAACGATTCGCTGGGCTATTTCGCGACGCGTCGCGACAAGGC GGTGGTCTTCGCCCCGAACGGACGGGCCGCGATCACCTACCGGGTCGAGGTCGGCGTGTGCCTGGCCAGCGGCGACCCGG TCGGCGACCCGAAGGCGTGGCCGCAGGCCATCGAGGCGTGGCTGACGTTGTGTGAGACCTACGGGTGGGCGCCGGGTGTC ATGGGCGCCAGCGCGACCGGCGCACAGGCGTTCCGCCAGGCGGGCCTGCACGCGCTGCAACTCGGCGACGAAGCGATCCT GCATCCGGACGATTTCCGTCTCTCCGGACCCGAGATGCGCGCGGTGCGCCAAGCCGTCACCCGCGCTCGACGCGCCGGCG TCGCCGTGCGCTTCCGCAGACACCGCGAGTTGTCACCCGACGAGATGGCCGAGGTGATCGCGCACGCCGACGCCTGGCGT GACACCGAGGACGAGCGCGGATTCTCGATGGCGCTGGGCCGGCTCGGTGACCCCGCCGACGCCGACTGCCTCCTGGTGGA GGCCGTACAGAACGGGACCCAGGTCGTCGCGATGCTGTCGCTGGTGCCGTGGGGCAGCAACGGTGTGTCACTGGACCTGA TGCGACGTGCCCCCCAATCCCCCAACGGCACCATCGAATTGATGGTCAGCGAGCTGTGCCTGCAATCCGAGAGCATCGGC ATCAGCCGGATCTCGCTGAACTTCGCGATGTTCCGCTCGGCGTTCGAGCAGGGCGCACAACTCGGCGCCGGCCCGGTGGC CCGGCTGTGGCGTTGGCTGCTGGTCTTCTTCTCGCGCTGGTGGCAGTTGGAGACGCTGTACCGCTCCAACATGAAGTACC GGCCCGAATGGGTGCCCCGCTACGCGTGTTACGAGGACGCCCGGCTGGTGCCCAGGGTCGGGGTCGCCTCGGTCATCGCC GAAGGCTTTCTGGTGCTTCCCTTCTCGCGGCGCCACGATCAACCCCACACGGGGCACCACATCGCCGCACCGGGCGACCT GATCGCCACCGGACGCCTGCACAGCGACGGAACGGCACCCGACCGCATCGGGCCCGTGGGCGACGGGGCCGACGACGACG CCGCCCCGCGCCTGCCCGAGCAGGTCCGGGTGCGGATGGCGAAGCTCAGCGCCCTGCAGGACCGGGGCGTCGACGCCTAC CCCGTGGGCAGCCCGCCCAGCCACACCATCGCCGAGGCGATCGCCGCCGAGGAAGGCACCGAGGTCACGGTGTCCGGCCG GGTTCTGCGGGCCCGCGACTACGGTGGTGTGCTCTTCGGTCAGCTACGCGACTGGTCCGCCGAAACCCAGGTGGCGCTGG ACAATTCGGCGCTGCTCGACGGAACCACCACCGACTTCACCCGCACCGTCGACCTCGGCGACCTGATCGAGGTGACCGGC ACGATGGGCCACACCCGGTCGGGTTCGTGGTCGGTGCTGGTGACCCGGTGGCGGTTGATCGGCAAGTGCCTGCGGCCGCT GCCCGACAAGTGGAAGGGGTTGACCGACCAGGAGGCGCGGGTGCGCGCCCGCTACGTCGACCTCGCGGTCAACACCGACG CCCGCGAACTCATCAAGGCCCGCAGCGCCATTCTGCACGCCATCCGCGAAACCCTGGTCGGCAAAGGCTTTCTCGAGGTC GAGACGCCGATCCTGCAGCAGATCCACGGCGGCGCCAACGCGCGTCCGTTCCTGACCCACATCAACGCCTACGACCTGGA CCTGTATCTGCGGATCGCACCCGAGTTGTATCTGAAGAGGCTCTGTGTCGGGGGCGTCGAGCGGGTCTTCGAGCTGGGCC GGGCGTTCCGGAACGAGGGGGTCGACTTCAGCCACAATCCCGAATTCACCCTGCTGGAGGCCTACCAGGCGCACGCGGAC TACACCGTGTGGATCGACGGGTGCCGCGAGCTGATCCAGAACGCGGCCATGGCCGCCAACGGCTCCCACGTGTTCTTCCG TCCGCGCGAGGACGGGGTCCTCGAACCGGTCGACATCTCCGGCCGATGGGCGGTCAAGACGGTTCACGGCGCGGTGTCGG AGGCACTCGGCGAGCACATCGACGTCGACACCGACCTGGCGACGCTGCGCCGCCTCTGCGACAAGGCCGGCATCCCCTAC CTGACGCACTGGGACGCCGGCGCGGTGGTCCTCGAGATGTACGAGCACCTCGTCGAGGACCAGACCACCGAACCCACCTT CTACAAGGACTTCCCGACGTCCGTGTCGCCGCTGACCCGGCCGCACCGCAGCATCCCGGGGGTCGCCGAACGCTGGGACC TCGTCGCGTGGGGGGTCGAGCTCGGCACCGCCTACAGCGAACTGACCGACCCTGTGGAGCAGCGCCGCAGGTTGCAGGAG CAGTCGCTGCTGGCCGCAGGCGGCGACCCGGAGGCGATGGAGCTCGACGAGGACTTCCTGCAGGCGATGGAGTACGCGAT GCCGCCGACCGGAGGCCTCGGAATGGGTGTCGATCGGGTGGTCATGCTGATCACCGGGCGCAGCATCCGCGAGACGCTGC CGTTCCCGCTCGCGAAACCGAGGTAG Protein sequence : MTATRLVRAHPESSHRWVPAAAGWIVGVIATLSLLASVSPLVRSIIRVPREFVDDYIFNFPDTSFAWAFVLALLAAALAA RKRIAWWILTGYMVAAAVWNVTGLLDGDRWFEDVGEIIGLGFHLAAIASLLLARREFWARVRPGALVKAAVTLVAGLAVG TLIGWGLLKLFPGTLARPDRFWYALNRVGAFAGADAGAFSGHPHVLVNALLGLFGAMALMIAAVVLFQSQRADNALTGED ESAIRGLLELYGKNDSLGYFATRRDKAVVFAPNGRAAITYRVEVGVCLASGDPVGDPKAWPQAIEAWLTLCETYGWAPGV MGASATGAQAFRQAGLHALQLGDEAILHPDDFRLSGPEMRAVRQAVTRARRAGVAVRFRRHRELSPDEMAEVIAHADAWR DTEDERGFSMALGRLGDPADADCLLVEAVQNGTQVVAMLSLVPWGSNGVSLDLMRRAPQSPNGTIELMVSELCLQSESIG ISRISLNFAMFRSAFEQGAQLGAGPVARLWRWLLVFFSRWWQLETLYRSNMKYRPEWVPRYACYEDARLVPRVGVASVIA EGFLVLPFSRRHDQPHTGHHIAAPGDLIATGRLHSDGTAPDRIGPVGDGADDDAAPRLPEQVRVRMAKLSALQDRGVDAY PVGSPPSHTIAEAIAAEEGTEVTVSGRVLRARDYGGVLFGQLRDWSAETQVALDNSALLDGTTTDFTRTVDLGDLIEVTG TMGHTRSGSWSVLVTRWRLIGKCLRPLPDKWKGLTDQEARVRARYVDLAVNTDARELIKARSAILHAIRETLVGKGFLEV ETPILQQIHGGANARPFLTHINAYDLDLYLRIAPELYLKRLCVGGVERVFELGRAFRNEGVDFSHNPEFTLLEAYQAHAD YTVWIDGCRELIQNAAMAANGSHVFFRPREDGVLEPVDISGRWAVKTVHGAVSEALGEHIDVDTDLATLRRLCDKAGIPY LTHWDAGAVVLEMYEHLVEDQTTEPTFYKDFPTSVSPLTRPHRSIPGVAERWDLVAWGVELGTAYSELTDPVEQRRRLQE QSLLAAGGDPEAMELDEDFLQAMEYAMPPTGGLGMGVDRVVMLITGRSIRETLPFPLAKPR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lysS1 | YP_005686365.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 8e-152 | 44 |
| lysS1 | YP_005682181.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 2e-151 | 44 |
| lysS1 | YP_005684273.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 8e-152 | 44 |
| lysX | YP_003784331.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 8e-152 | 44 |
