Gene Information

Name : Mspyr1_24860 (Mspyr1_24860)
Accession : YP_004076961.1
Strain : Mycobacterium gilvum Spyr1
Genome accession: NC_014814
Putative virulence/resistance : Virulence
Product : ABC-type metal ion transporter periplasmic protein/surface adhesin
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 2570155 - 2571096 bp
Length : 942 bp
Strand : -
Note : PFAM: Periplasmic solute binding protein family

DNA sequence : 
GTGGGAGCACGGCACGCAAGCCGACGTGCGCGAGGCCGGCCGGCCACGTGGGTGGCGATCGCCTGCTGCGCGTCGATGGT
GGCGTGTTCCTCACCGATCGACACCGGCGATGCCGCACGGCCCACGGTGCTGACGACGTTCACCGTGCTGGCCGACATCG
CCGCCAACGTGGCCGGTGACCATCTGACCGTGGAGTCGATCACCAAGCCGGGCGCGGAGATTCACGGCTACGAGCCCACT
CCCGGTGATATCAGGAAAGCGGCGAGGGCCGATCTGATCCTCGACAACGGGCTGAACCTGGAAGCCTGGTTCGCCCGGTT
CGTCGACGGCATCGACGTCCCGCACGTCGTTGTCAGCGACGGTGTCGCCCCGCTCGAGATCGCCGAAGACGCGTACACCG
GGATGGCGAATCCGCACGCCTGGATGTCCCCGCTCAACGTCCAGATATACGCCGACAACATGGCCGACGCATTCGCCGAC
CTCGACCCCGACCACGCCCAGGCCTATCGCGACAACGCCGCCGCCTACCGCACCCAGCTCCAGGAAGTCCATGACGAGCT
CGTCGAGCGACTCGACGCGCTGCCGCCCACCCAACGCGCGCTGGTGACCTGCGAGGGAGCCTTCTCCTATCTGGCCCGCG
ATGCCGGTCTGACCGAGAAGTACATCTGGGCGGTCAACGCCGAGCAGCAGGCGACCCCTCAACAGATCGCCTCGACCATC
GAGTTCGTCGACGCCAACGACGTCCCCGCGGTGTTCTGTGAGTCCACCGTCTCCGACGCACCGATGCAGCGCGTCGTGGA
AGCCACCGGAACACGTTTCGGCGGAGTGCTTTTCGTCGACTCCCTCTCGGAGGCCGACGGGCCGGTTCCCACCTATCTCG
ACCTGATCCGCCACGACGCCACCACCATCGCGGCGGCCTTGACCGCCGACCGCGCGTCGTGA

Protein sequence : 
MGARHASRRARGRPATWVAIACCASMVACSSPIDTGDAARPTVLTTFTVLADIAANVAGDHLTVESITKPGAEIHGYEPT
PGDIRKAARADLILDNGLNLEAWFARFVDGIDVPHVVVSDGVAPLEIAEDAYTGMANPHAWMSPLNVQIYADNMADAFAD
LDPDHAQAYRDNAAAYRTQLQEVHDELVERLDALPPTQRALVTCEGAFSYLARDAGLTEKYIWAVNAEQQATPQQIASTI
EFVDANDVPAVFCESTVSDAPMQRVVEATGTRFGGVLFVDSLSEADGPVPTYLDLIRHDATTIAAALTADRAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 5e-71 58
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 4e-71 58
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 6e-71 58
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 5e-71 58
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 5e-71 58

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mspyr1_24860 YP_004076961.1 ABC-type metal ion transporter periplasmic protein/surface adhesin BAC0349 Protein 2e-71 58
Mspyr1_24860 YP_004076961.1 ABC-type metal ion transporter periplasmic protein/surface adhesin BAC0439 Protein 9e-68 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mspyr1_24860 YP_004076961.1 ABC-type metal ion transporter periplasmic protein/surface adhesin VFG0525 Protein 2e-71 58