Gene Information

Name : Mspyr1_02230 (Mspyr1_02230)
Accession : YP_004074777.1
Strain : Mycobacterium gilvum Spyr1
Genome accession: NC_014814
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 220224 - 221063 bp
Length : 840 bp
Strand : +
Note : PFAM: Integrase core domain

DNA sequence : 
ATGGCCCCGAGCACCTACTACGACACTAAGGCCCGCGCCCCGTCGGCACGCGCCCAACGCGACGCCGAGCTGGGGCCGGC
GCTGGTGAAGCTCTGGGAGGACAACTACCGCGTCTATGGGGCCCGCAAGCTGTGGAAAGCGGCACGTCGGGACGGCCACG
ACGTGGGCCGCGACCAGGTGGCCCGGCTGATGCGGGCCGCCGGCATCTGCGGAGCACGGCGCGGGAAACGGGTGCGCACC
ACCACGGCGGATCCCGCCGCCGCGCGGCACCCCGATCTTGTCCGGCGCACGTTCACCGCGACCGCGCCGAACCAGCTTTG
GGTGACGGATCTGACGTTCGTGCCGACCTGGGCCGGCGTCGCTTATGTGTGTTTCATCATCGACGCGTTCTCGCGGATGA
TCGTCGGCTGGCGGGTTGCCTCGCACATGCGCACCACCATGGTGCTCGACGCGCTGGAGATGGCCCGCTGGTCACGGGGG
AACCTGTTGGCGGGCTTGACATGTCACTCCGATGCGGGATCGCAGTTCACCTCCATCCGCTACGGCGAGCGGCTCGCCGA
AATCGGCGCAGTCCCCTCTATAGGGTCGATCGGGGACAGCTTTGACAACGCTCTCGCGGAGACGGTGAACGGCTACTACA
AGGCTGAGCTGATCTACGGGCCGGCGCGCTCCGGGCCGTGGAAGACCGTCGAGGACGTCGAACTGGCCACCCTGGGCTGG
GTGTACTGGCACAACACCAACCGCCTACACGGCTACCTCAAAGACATCCCGCCGGCCGAGTTCGAAGCCGCGTTCTACGA
TGCACAACGGACCGACCGACCCCTGGTCGAAATCCAATAA

Protein sequence : 
MAPSTYYDTKARAPSARAQRDAELGPALVKLWEDNYRVYGARKLWKAARRDGHDVGRDQVARLMRAAGICGARRGKRVRT
TTADPAAARHPDLVRRTFTATAPNQLWVTDLTFVPTWAGVAYVCFIIDAFSRMIVGWRVASHMRTTMVLDALEMARWSRG
NLLAGLTCHSDAGSQFTSIRYGERLAEIGAVPSIGSIGDSFDNALAETVNGYYKAELIYGPARSGPWKTVEDVELATLGW
VYWHNTNRLHGYLKDIPPAEFEAAFYDAQRTDRPLVEIQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 2e-42 54
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 5e-42 53
tnpC AAD44736.1 TnpC Not tested SHI-2 Protein 9e-41 53
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 1e-47 52
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 3e-50 51
Z1221 NP_286756.1 transposase Not tested TAI Protein 1e-51 51
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 1e-51 51
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 7e-51 51
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 7e-51 51
Z1198 NP_286733.1 transposase Not tested TAI Protein 4e-51 50
Z1638 NP_287141.1 transposase Not tested TAI Protein 4e-51 50
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 2e-49 50
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 2e-49 50
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 2e-49 50
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 1e-49 50
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-50 50
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 7e-51 50
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 1e-50 50
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 4e-51 50
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 7e-51 50
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-34 50
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 3e-49 49
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 6e-50 48
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 3e-38 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mspyr1_02230 YP_004074777.1 transposase VFG1602 Protein 2e-49 49