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Name : serS (HFELIS_02160) Accession : YP_004072890.1 Strain : Helicobacter felis ATCC 49179 Genome accession: NC_014810 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 182845 - 184104 bp Length : 1260 bp Strand : + Note : - DNA sequence : ATGATTGATAAAAAATTGCTATTAAAAGATTTTGAGGGTGTGGTGGAAAATCTGCAAAAACGCTTTGTAGACCCCCAAGT TTTGCTAAATTTAAAAGAGGTGTTGCTAGAGTTTAAAGCCCAAAAACTCCAGCTTGAAGAGTCCCAAGCTTTCCAAAACA AGATTTCTAAGGATTTCTTCCAAGCCCAACGCCAAAATGACCCACAAGCTAGAGATCTCAAAACCTCTTTAGAGGAAAAT AAAACCAAGATCGCCCACCTGCAAGCCCAAGTCAATACCCTAGAAGAAAAACTAGACACGCTTTTAGCAGGACTGCCTAA CTTGCTCGATCCGGCTACGCCCTTTGGCAAGGATGAAAGCGACAATGTGGAGATCAAGCGCATTTTAACCCCTAAGAGTT TTGATTTTGAGCCCCAAGAGCACCACATTTTGGCTCAAAAAAATGGCTGGATCGAGTTTGAGCGTGCGGTAAAAATCTCT AAGAGTCGTTTTAATGTCTTGCGCGCGCGCGGGGCGTTGGTGCATAGAGCCCTAGCGAATTTCATGCTCGATTCTAATGC CTCACGCGGGTTTGAGATCGTGAGCCCGCCCGTGATTGTGAATACCACAACTCTTTTTGGCACGGGGCAGTTGCCTAAAT TTCAAGAAGACCTTTTTAAGATTGAGGACGAATCCCTCTATTTAATCCCTACCTCTGAGGTAAGTTTGACCAATCTCTAT GCTGATGAGATTTTACGCGTGGAAGATTTGCCCATTATGATGACTGCCTGCACCCCCTGTTTTCGCAAAGAGGCAGGCAG TGCCTCTAAAGACACACATGGAATGATCCGCCAACACCAATTTGACAAAGTGGAATTAGTGGCCATCACCCACCCAGATG AGAGCGCGCACATGCAAGAGAAAATGTTAGAGGCGGCTAGCGCGATTCTATGTGCTTTAGAATTGCCCCATCGTTTTGTG CAACTTTGTAGCGGAGATTTGGGTTTTAGTGCGAGCAATACGGTGGATATTGAAGTGTGGTTGCCCGGGCAAAATTGTTA TCGTGAAATTAGTTCGGTGTCCAACACGCGCGATTTTCAAGCTCGGCGGGCCAAAATCCGCTACAAAGAAGGCAAGAAAA ACGCGTTGGCGCATACACTCAATGGCTCTTCTCTAGCCATTGGGCGCACCTTAGTCGCCTTGATGGAAAACCACCAGACT CGCGATGGGGATATTCATATTCCCAAAGCTTTAGAACCTTATTTAAAATCTTGGGTGTGA Protein sequence : MIDKKLLLKDFEGVVENLQKRFVDPQVLLNLKEVLLEFKAQKLQLEESQAFQNKISKDFFQAQRQNDPQARDLKTSLEEN KTKIAHLQAQVNTLEEKLDTLLAGLPNLLDPATPFGKDESDNVEIKRILTPKSFDFEPQEHHILAQKNGWIEFERAVKIS KSRFNVLRARGALVHRALANFMLDSNASRGFEIVSPPVIVNTTTLFGTGQLPKFQEDLFKIEDESLYLIPTSEVSLTNLY ADEILRVEDLPIMMTACTPCFRKEAGSASKDTHGMIRQHQFDKVELVAITHPDESAHMQEKMLEAASAILCALELPHRFV QLCSGDLGFSASNTVDIEVWLPGQNCYREISSVSNTRDFQARRAKIRYKEGKKNALAHTLNGSSLAIGRTLVALMENHQT RDGDIHIPKALEPYLKSWV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 1e-80 | 46 |
