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Name : lysS (HFELIS_13000) Accession : YP_004073974.1 Strain : Helicobacter felis ATCC 49179 Genome accession: NC_014810 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 1288045 - 1289535 bp Length : 1491 bp Strand : - Note : - DNA sequence : ATGTTTAGTAATCCTTATATCCAGCAACGCATCCAAAAGGGTGATCTTCTACGCTCATTGGCGCAGAACCCTTATAACAA CCAAGTCCAACGCACTCTAAGCAATGCGCAGTTTTTAGAAGCTTTTAAAACCCTCACAGAGGGGCAAAAAGACCCCGCTA GCTCCCATGCTTTAGTGGGACGGGTGCGCTTTATCCGTTTGATGGGCAAGGCTTGTTTTCTAAAAATAGAAGATCAAAGT GCGCTCGTGCAGGTGTATTTGTCTCAAAATGACTTGGGTAAAGAGGCCTTTGATAGCTTTAAAAAATGTGTAGAAGTGGG CGACATTGTGAATGTGGAGGGTTATCCCTTTGTTACTAAGACCAATGAGCTTAGTCTACACGCCACTTCTTATAAAATAC TCACTAAAGCCATCGTACCTTTGCCTGAAAAGTTTCATGGATTAAGCGATATTGAATTGCGCTACCGCCAACGCTATGTG GACTTGATCGCCAACCCGGAAGTTAAAGAGGTTTTTAAAACTCGTAGCCAAATTGTGGCGATCATCCGCCGTTTTTTTGA GCAAAAGGGCTTTTTAGAGGTGGAAACCCCGATGATGCACCCCATTGCCGGAGGAGCCAACGCGCGCCCCTTTATCACCT ACCACAACGCCCTAGAGGTGGAGCGTTATTTGCGCATTGCCCCTGAATTGTATCTAAAACGCCTTGTAGTTGGGGGGTTT GAAGCGGTGTTTGAGATCAACCGCAATTTTAGAAATGAGGGCATGGATCACTCCCACAACCCCGAATTTACCATGCTGGA ATTTTATTGGGCGTATAAAACCTATGAAGACCTAATCGCGCTCACCAAAGAGCTCTTTGAAGAATTATTACAAGCGTTAA ATTTACCCACACAGATCACTTACCAAGAGCACACCATCGATTTTAGCGCGATAAGAGTGCTAGGTTTTAAACAGGCTCTT ATAGAGATTGGAGGGTTAGAAAATAGCATAGTAGAGAATAGTGCGCTTTTGCAAGCTTTCTTGGAAAAGCAGGGGGTTAA GCTGGAAGGTTTAATCACACATGGCAAATTGCTCGCTGAAGCCTTTGATTTGTGCGTGGAATCTAAGCTGATCAATCCTA CTTTTATTACGGAATATCCCATTGAAATCAGTCCTCTAGCGCGCCGTAACGACACAGACCCTAACATTGCCGATCGCTTC GAGCTCTTCATCGCGGGTAAAGAGATCGCCAATGGGTTTAGCGAACTCAACGATCCCCTAGATCAATACCAACGCTTTGA AGAACAGGTGAGAGCAAAAGAGAGCGGGGATGAAGAGGCGCAATTTATGGATAGCGACTATGTGTGGGCCCTAGGGCATG GCATGCCTCCTACAGCCGGGGAAGGGATTGGCATTGATCGCTTGGTGATGTTGCTCACCAATTCTAAAACTATCAAAGAT GTAATTTTATTCCCTGCAATGAAACCTGAAAATAAGGACAAACATGTCTAA Protein sequence : MFSNPYIQQRIQKGDLLRSLAQNPYNNQVQRTLSNAQFLEAFKTLTEGQKDPASSHALVGRVRFIRLMGKACFLKIEDQS ALVQVYLSQNDLGKEAFDSFKKCVEVGDIVNVEGYPFVTKTNELSLHATSYKILTKAIVPLPEKFHGLSDIELRYRQRYV DLIANPEVKEVFKTRSQIVAIIRRFFEQKGFLEVETPMMHPIAGGANARPFITYHNALEVERYLRIAPELYLKRLVVGGF EAVFEINRNFRNEGMDHSHNPEFTMLEFYWAYKTYEDLIALTKELFEELLQALNLPTQITYQEHTIDFSAIRVLGFKQAL IEIGGLENSIVENSALLQAFLEKQGVKLEGLITHGKLLAEAFDLCVESKLINPTFITEYPIEISPLARRNDTDPNIADRF ELFIAGKEIANGFSELNDPLDQYQRFEEQVRAKESGDEEAQFMDSDYVWALGHGMPPTAGEGIGIDRLVMLLTNSKTIKD VILFPAMKPENKDKHV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 2e-106 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_004073974.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 1e-106 | 50 |
