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Name : fliP (HFELIS_12390) Accession : YP_004073913.1 Strain : Helicobacter felis ATCC 49179 Genome accession: NC_014810 Putative virulence/resistance : Virulence Product : flagellar biosynthesis protein Function : - COG functional category : N : Cell motility COG ID : COG1338 EC number : - Position : 1216838 - 1217596 bp Length : 759 bp Strand : + Note : - DNA sequence : TTGTTATTAAGATTAGTGTTAGGGCTTTTAATTTTAGCTCTAGGACTTGGAGGGGTAGAATTCCCCAAAGACCCAGTGAT TCCTACGATTGATTTATCTTTGAGCGCGCCGCACACACCCACACAATTAGTTACTACTCTAAATGTTGTCTTAGTGCTCA CGCTCTTAGTCTTAGCACCCTCTTTGGTGCTAACAATGACAAGTTTCATCCGCCTGATTGTGGTCTTTTCTTTCTTGCGC ACCGCCTTGGGCACGCAACAAACCCCGCCTACACAAATTCTAGTTTCTTTAGCCTTGATCCTTACTTTTTTCATTATGGA GCCCACTGCTAAGAAAAGTTACAAGATCGCCATTAAGCCCTATTTGGCCGAAAAAATTTCCTACACGCAAGCTTTTGAGA GGGGGGTAGTGCCTTTTAAGGAGTTTATGCTCAAAAACACGCGCGAAAAAGATTTGGCCCTCTTTTTTAGAATCCGTAAC TTAGAAAATCCTAAAGATGTTAATAGCGTGCCCTTGAGTGTCTTAGTGCCCGCTTTTATGATCAGTGAGCTCAAAACCGC TTTTCAGATCGGATTTTTACTCTATCTGCCTTTTTTGGTGATTGATATGGTGGTCAGTTCCATTTTAATGGCAATGGGGA TGATGATGCTCCCCCCTGTGATGATCTCCTTGCCCTTTAAAATTCTAGTTTTTATCTTGGTAGATGGCTTCAATCTTTTG ATCGAAAACTTGGTAGCTAGTTTCAAGCATATCAGCTAA Protein sequence : MLLRLVLGLLILALGLGGVEFPKDPVIPTIDLSLSAPHTPTQLVTTLNVVLVLTLLVLAPSLVLTMTSFIRLIVVFSFLR TALGTQQTPPTQILVSLALILTFFIMEPTAKKSYKIAIKPYLAEKISYTQAFERGVVPFKEFMLKNTREKDLALFFRIRN LENPKDVNSVPLSVLVPAFMISELKTAFQIGFLLYLPFLVIDMVVSSILMAMGMMMLPPVMISLPFKILVFILVDGFNLL IENLVASFKHIS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| escR | AFO66317.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 8e-23 | 45 |
| escR | AFO66400.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 8e-23 | 45 |
| ssaR | CAA68199.1 | secretion system apparatus, SsaR | Virulence | SPI-2 | Protein | 7e-27 | 44 |
| ssaR | YP_216427.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 9e-27 | 44 |
| ssaR | NP_460384.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 9e-27 | 44 |
| YPO0270 | YP_002345352.1 | type III secretion system protein | Virulence | Not named | Protein | 2e-25 | 44 |
| yscR | NP_456109.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 5e-26 | 43 |
| yscR | NP_805090.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 5e-26 | 43 |
| escR | ACU09473.1 | type III secretion system protein EscR | Virulence | LEE | Protein | 3e-22 | 43 |
| escR | YP_003236103.1 | T3SS structure protein EscR | Virulence | LEE | Protein | 4e-22 | 43 |
| escR | NP_290283.1 | type III secretion system protein | Virulence | LEE | Protein | 4e-22 | 43 |
| escR | AAC38369.1 | EscR | Virulence | LEE | Protein | 1e-21 | 43 |
| ECs4583 | NP_312610.1 | type III secretion system protein | Virulence | LEE | Protein | 4e-22 | 43 |
| escR | AAK26700.1 | EscR | Virulence | LEE | Protein | 3e-22 | 43 |
| escR | AAL57527.1 | EscR | Virulence | LEE | Protein | 3e-22 | 43 |
| escR | CAC81847.1 | EscR protein | Virulence | LEE II | Protein | 3e-22 | 43 |
| escR | CAI43889.1 | EscR protein | Virulence | LEE | Protein | 3e-22 | 43 |
| escR | YP_003223490.1 | T3SS structure protein EscR | Virulence | LEE | Protein | 5e-22 | 43 |
| escR | AAC31528.1 | L0049 | Virulence | LEE | Protein | 3e-22 | 43 |
| escR | YP_003232138.1 | type III secretion system protein | Virulence | LEE | Protein | 5e-22 | 43 |
| lscR | AAO18040.1 | LscR | Virulence | TTSS locus | Protein | 7e-26 | 42 |
| hrcR | AAP34349.1 | HrcR | Virulence | Hrp PAI | Protein | 2e-28 | 41 |
| hrcR | NP_640757.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 3e-28 | 41 |
| hrcR | YP_362153.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 3e-28 | 41 |
| hrcR | AAD21321.1 | HrcR | Virulence | Hrp PAI | Protein | 2e-28 | 41 |
| unnamed | AAL06354.1 | EscR | Virulence | LEE | Protein | 3e-22 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| fliP | YP_004073913.1 | flagellar biosynthesis protein | VFG1259 | Protein | 4e-41 | 56 |
| fliP | YP_004073913.1 | flagellar biosynthesis protein | VFG2494 | Protein | 5e-43 | 56 |
| fliP | YP_004073913.1 | flagellar biosynthesis protein | VFG2338 | Protein | 2e-39 | 55 |
| fliP | YP_004073913.1 | flagellar biosynthesis protein | VFG2016 | Protein | 5e-40 | 54 |
| fliP | YP_004073913.1 | flagellar biosynthesis protein | VFG0519 | Protein | 4e-27 | 44 |
| fliP | YP_004073913.1 | flagellar biosynthesis protein | VFG0394 | Protein | 1e-25 | 43 |
| fliP | YP_004073913.1 | flagellar biosynthesis protein | VFG0715 | Protein | 9e-22 | 43 |
| fliP | YP_004073913.1 | flagellar biosynthesis protein | VFG0827 | Protein | 2e-22 | 43 |
| fliP | YP_004073913.1 | flagellar biosynthesis protein | VFG0044 | Protein | 7e-27 | 42 |
| fliP | YP_004073913.1 | flagellar biosynthesis protein | VFG0188 | Protein | 6e-28 | 42 |
