Gene Information

Name : gspF (PSM_A0729)
Accession : YP_004067828.1
Strain :
Genome accession: NC_014803
Putative virulence/resistance : Virulence
Product : general secretion pathway protein F
Function : -
COG functional category : N : Cell motility
COG ID : COG1459
EC number : -
Position : 787569 - 788681 bp
Length : 1113 bp
Strand : +
Note : -

DNA sequence : 
GTGGTGCCAGCTGCTCAAGATGATAAACAAGTTCGAGGTCAAAAAGCGCCATTATTAGGCTCTTTATTTAAGCCGACAAT
ATCAACGTCAGATCTTGCTTTGATTACACGTCAACTTGCGACCCTAATTCAGTCAGCCTTACCCGTTGAGGGTGCCGTGA
TGGCGGTTGCTGAGCAGTGTGAAAAACCACGGCTAAAACGTATGTTAATGTCTGTGCGCTCTAAAGTGGTGGAAGGGTAT
ACGCTTGCTGATGGGATGAGTGAATTTCCGCATGTATTTGACGATTTATACCGTGCAATGGTGGCCGCAGGTGAAAAGTC
AGGTCACTTAGATCAAGTACTTAACAGATTGGCTGATTACACCGAGCAACGCCAACACATGCGTAGCCAAATTACGCAAG
CGATGGTGTATCCCATTATTTTGGTCGTGTTCGCTATTGGTATTGTTTCAGTATTATTAGGTACTGTGGTGCCTAAAATA
CTAAAAACGTTTGAAAAAACCAAACAAGTATTACCTTGGACAACCGAATGGGTCATGGCGGGTAGTCATTTTGTACAAAA
TTATTGGTTTGTTAGTTTATTAGCGATCACGGCGATTGCTATTGGAATTAAATACGCACTTAAAAAACCTAAAGTACGGT
TTTGGTGGGATGCAAAAGTATTACATATGCCAGGCATAGGTAAGGTTGCTAGAGGTATTAACACGGCGCGCTTTGCCCGT
ACATTAAGTATTTTATCGTCAAGCTCAGTGCCGCTACTTGAAGGAATGCGTATTTCAGGTGGGGTGTTGGTTAACGAAAA
AATAAAGCAAGCAGTGGCAGATGCCGCAGAAAGAGTCAGTGAAGGGGCGAGTCTTCGTGCTTCACTACAGCAAACTAAGT
TGTTTCCACCAATGATGCTACATATGATAGCCAGTGGTGAAAAGTCCGGTGAACTTGAGCAAATGTTAGAGCGTGCTGCT
AACAATCAAGATCGCGAGTTTGAAAGTATGGTTAATGTGTCATTAAAATTATTGGAACCGGCAATGATTGCCTCTATGGC
AGTGATTGTGCTTTTCATAGTAATGGCAATTTTGCAGCCAATTATGGCAATGAACAAGGCCGTAGGTCTTTAA

Protein sequence : 
MVPAAQDDKQVRGQKAPLLGSLFKPTISTSDLALITRQLATLIQSALPVEGAVMAVAEQCEKPRLKRMLMSVRSKVVEGY
TLADGMSEFPHVFDDLYRAMVAAGEKSGHLDQVLNRLADYTEQRQHMRSQITQAMVYPIILVVFAIGIVSVLLGTVVPKI
LKTFEKTKQVLPWTTEWVMAGSHFVQNYWFVSLLAITAIAIGIKYALKKPKVRFWWDAKVLHMPGIGKVARGINTARFAR
TLSILSSSSVPLLEGMRISGGVLVNEKIKQAVADAAERVSEGASLRASLQQTKLFPPMMLHMIASGEKSGELEQMLERAA
NNQDREFESMVNVSLKLLEPAMIASMAVIVLFIVMAILQPIMAMNKAVGL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspF YP_854405.1 type II secretion protein GspF Not tested PAI I APEC-O1 Protein 4e-79 54
gspF CAE85232.1 GspF, hypothetical type II secretion protein Not tested PAI V 536 Protein 3e-78 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
gspF YP_004067828.1 general secretion pathway protein F VFG2049 Protein 2e-75 55
gspF YP_004067828.1 general secretion pathway protein F VFG0181 Protein 3e-73 48
gspF YP_004067828.1 general secretion pathway protein F VFG1870 Protein 3e-68 43