Gene Information

Name : lysS (PSM_A2527)
Accession : YP_004069592.1
Strain :
Genome accession: NC_014803
Putative virulence/resistance : Virulence
Product : lysyl-tRNA synthetase
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG1190
EC number : -
Position : 2699012 - 2700547 bp
Length : 1536 bp
Strand : -
Note : -

DNA sequence :
ATGACTGATCAAATCCAAGACGAAAATAAGTTAATCGCTGAGCGTCGCGGCAAATTAGACGCTATTCGCGCAAATTGCCC
AGCCAACGGTCATCCAAACCAATTCCGTCGTGAGCATTACACGGCAGATTTGCAGGCTGAGTTTGGTGATAAGAGTAAAG
AAGAATTAATCGAATTACAGCACGTAGTATCGATTGCAGGTCGTATTCTTGCTAAGCGTGGTCCGTTTATGTCTATTCAA
GATATGAAAGGCCGTGTACAAGTTTATGCATCAAAAGACGTACAAAAAGATTTAAAAGCAAAATATGGCCAGCTTGATAT
TGGCGATATTATTGGTGTTAAAGGGCCGCTTAATAAATCGGGTAAAGGCGATTTATACGTAGATATGGCTGAGTACGAAC
TGCTGACTAAGTCACTTCGTCCACTACCAGAAAAATTCCATGGTCTATCGGATCAAGAAACTAAATACCGTCAACGTTAT
GTTGATTTAATTACTAACGAAGCAACGCGTGAAACATTCCGCATTCGCTCACAAGTGGTTGAAGGTATTCGTCGCTTTTT
AGCAGACCGCGATTTTATGGAAGTAGAAACGCCAATGCTACAGGTTATTCCTGGTGGTGCATCTGCGCGCCCATTCGTAA
CTCATCATAATGCGCTTGATATCGACATGTACTTACGTATTGCGCCTGAGCTTTACTTAAAGCGTTTAGTAGTAGGTGGT
TTTGACCGTGTATTCGAAATTAACCGAAACTTCCGTAACGAAGGGTTATCAACGCGTCACAACCCAGAATTCACCATGAT
TGAGTTCTACCAAGCATACGCTGACTACATTGATTTAATGAACATCACCGAAGACATGTTACGTACAGTTGCAACTAACG
TACTGGGCAGCCCAATTGTGGTTAACACCACTAAAGATGAAAACGGCGACGTTGTTGATTCAGTAGAGTATGACTTTGGT
CAACCGTTCACACGTTTAAGCATGAGCGACGCAATCTTAAAATATAACCCTGAGTTTGATGCTGCGGTATTTAATGACCC
AGAAAACCACTTTGAAGAATTAAAAGCGTACGCGAAACAAGTGCATGTTAAAATTCCTGAAAACTGCGTATGGGGCCCGG
GTAAGTTTTTATGTGAAATATTTGAAGAGACGGCTGAGCATATGCTTATCCAACCGACATTTATCACAGGGTATCCGTGG
GAAGTATCGCCACTTGCACGTCGTAACGACGAAAACCCATTTGTTACTGACCGTTTTGAGTTCTTTGTTGGCGGGCGCGA
GCTTGCAAATGGCTTCTCTGAGCTTAATGATGCGCAAGACCAAGCAGAGCGTTTCACGCGTCAGGTTGAAGAAAAAGACG
CCGGTGATGATGAAGCAATGCACTACGACGAAGACTACATTCGCGCTCTAGAGTATGGTTTACCACCAACAGCCGGGGAA
GGGATTGGTATTGACCGTTTAGTCATGTTGTTTACTGACTCATCAACTATCAAAGATGTTATTTTATTCCCGCATATGCG
CCCACAAGCAGACTAA

Protein sequence :
MTDQIQDENKLIAERRGKLDAIRANCPANGHPNQFRREHYTADLQAEFGDKSKEELIELQHVVSIAGRILAKRGPFMSIQ
DMKGRVQVYASKDVQKDLKAKYGQLDIGDIIGVKGPLNKSGKGDLYVDMAEYELLTKSLRPLPEKFHGLSDQETKYRQRY
VDLITNEATRETFRIRSQVVEGIRRFLADRDFMEVETPMLQVIPGGASARPFVTHHNALDIDMYLRIAPELYLKRLVVGG
FDRVFEINRNFRNEGLSTRHNPEFTMIEFYQAYADYIDLMNITEDMLRTVATNVLGSPIVVNTTKDENGDVVDSVEYDFG
QPFTRLSMSDAILKYNPEFDAAVFNDPENHFEELKAYAKQVHVKIPENCVWGPGKFLCEIFEETAEHMLIQPTFITGYPW
EVSPLARRNDENPFVTDRFEFFVGGRELANGFSELNDAQDQAERFTRQVEEKDAGDDEAMHYDEDYIRALEYGLPPTAGE
GIGIDRLVMLFTDSSTIKDVILFPHMRPQAD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD66193.1 putative lysil-tRNA synthetase LysU Not tested PAI III 536 Protein 2e-132 57

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lysS YP_004069592.1 lysyl-tRNA synthetase VFG1668 Protein 1e-132 57