Gene Information

Name : ICDCCJ07001_554 (ICDCCJ07001_554)
Accession : YP_004066129.1
Strain : Campylobacter jejuni ICDCCJ07001
Genome accession: NC_014802
Putative virulence/resistance : Resistance
Product : macrolide-specific efflux protein macB
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 560116 - 560736 bp
Length : 621 bp
Strand : +
Note : -

DNA sequence : 
ATGATTTTTCTTAAAAATATTTGCAAAAATATAGGTGAAAATGCCATTTTAAAAAATGTAAGTTTAAGTATAGAAAAAGG
TGAATTTGTTGCTATTATAGGACAAAGTGGAAGTGGTAAAACTTCACTTTTGAATATCATAGGAACATTAGATACACCGA
GTAGTGGAACTTATGTTTTTGATGAGTATGAAGTCACTAAACTTAATAACGATGAAAAAGCAAGATTAAGGCGTGAAAAA
ATAGGCTTTATATTTCAAAGATACAATCTTTTAAGCTTGCTGAGTGCTAAAGAAAATGTTTCTTTACCTGCAGTTTATGC
GGGAAAAAAATTACAAGAAAGAAGTCAAAACGCTAAAAAACTTTTAAATGATTTAGAATTAGCTCATAAGTTAGATTCTA
AACCAAACGAATTAAGCGGAGGACAGCAACAACGCGTTTCTATAGCAAGAGCTTTGATGAATGGTGGAGAGCTTATTTTA
GCTGATGAGCCAACGGGGGCTTTGGATAGTAAAAGCGGCATTATGGTGCTTGAAATTTTACAAAAACTTAACGCACAAGG
CCATGCTATAGTCTTAGTAACTCACGATCCAAAAATTGCAGCACAGGCTAAAGGGTTATAG

Protein sequence : 
MIFLKNICKNIGENAILKNVSLSIEKGEFVAIIGQSGSGKTSLLNIIGTLDTPSSGTYVFDEYEVTKLNNDEKARLRREK
IGFIFQRYNLLSLLSAKENVSLPAVYAGKKLQERSQNAKKLLNDLELAHKLDSKPNELSGGQQQRVSIARALMNGGELIL
ADEPTGALDSKSGIMVLEILQKLNAQGHAIVLVTHDPKIAAQAKGL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 2e-37 45
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-30 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-29 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-29 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-29 44
unnamed AAP55232.1 unknown Not tested SaPIbov2 Protein 4e-29 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ICDCCJ07001_554 YP_004066129.1 macrolide-specific efflux protein macB NC_012469.1.7686878. Protein 6e-43 50
ICDCCJ07001_554 YP_004066129.1 macrolide-specific efflux protein macB CP001581.1.gene598.p Protein 2e-35 47
ICDCCJ07001_554 YP_004066129.1 macrolide-specific efflux protein macB NC_008702.1.4606598. Protein 2e-38 47
ICDCCJ07001_554 YP_004066129.1 macrolide-specific efflux protein macB NC_012469.1.7685735. Protein 3e-33 43
ICDCCJ07001_554 YP_004066129.1 macrolide-specific efflux protein macB CP001581.1.gene798.p Protein 8e-31 42