Gene Information

Name : PSM_B0346 (PSM_B0346)
Accession : YP_004065293.1
Strain :
Genome accession: NC_014800
Putative virulence/resistance : Unknown
Product : putative transposase ORFB
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 392334 - 393047 bp
Length : 714 bp
Strand : -
Note : -

DNA sequence : 
ATGTCAGTTTATGGTGCAAGAAAAATATGGAAGCAGCTACAGCTTGACGACCATCAAGTCGCCCGCTGTACAGTCGAACG
ATTGATGCGAGTTATGGGAATTCAAGGTGTTCGTCGGGGTAAAGCACATAAGACAACGATACCTGACGAGCAACAAGATA
AGCCACTTGATTTAGTTAATCGTCAATTTACTGCTGAGCAGCCAAATCAACTTTGGGTAGCTGACATCACCTATGTTGCC
ACATGGAGTGGGTTTGTTTATGTCGCTTTCGTGATAGATGTTTTTTCACGATACATTGTAGGTTGGCGTGTATCAACGAC
AATGCACACAGAGCTTATTCTTGATGCGTTAGAGCAAGCTATTTGGCATCGTGGCAACCCCGAAGGGTTAATTCACCACA
GCGACAGAGGCAGCCAATATTTGTCTATACGATACACTGAGCGACTTGCTGAAGCTGGAATTCAAGCGTCTATAGGCAGT
GTGGGTGACTCTTATGACAATGCATTGGCTGAAACAATAAATGGATTATTTAAAACAGAGATTATTCGCAGAAATGGCCC
GTGGAAGAATGTTGATGCTGTTGAATACGCAACGTTAGAGTGGGTCAATTGGTTTAATAATCAACGCTTATTATCTTCAA
TTGGGTATATTTCACCAGCTCAATATGAAACAGACTACTATGATAATTTAAACGAGTCAGGTAAAGTGGCCTGA

Protein sequence : 
MSVYGARKIWKQLQLDDHQVARCTVERLMRVMGIQGVRRGKAHKTTIPDEQQDKPLDLVNRQFTAEQPNQLWVADITYVA
TWSGFVYVAFVIDVFSRYIVGWRVSTTMHTELILDALEQAIWHRGNPEGLIHHSDRGSQYLSIRYTERLAEAGIQASIGS
VGDSYDNALAETINGLFKTEIIRRNGPWKNVDAVEYATLEWVNWFNNQRLLSSIGYISPAQYETDYYDNLNESGKVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 4e-60 62
tnpC AAD44736.1 TnpC Not tested SHI-2 Protein 5e-56 61
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 5e-60 61
c3594 NP_755469.1 transposase Not tested PAI I CFT073 Protein 1e-46 61
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-65 61
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-65 61
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 4e-65 60
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 3e-63 60
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 6e-65 60
Z1221 NP_286756.1 transposase Not tested TAI Protein 4e-64 60
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 4e-65 60
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 4e-64 60
Z1198 NP_286733.1 transposase Not tested TAI Protein 2e-64 60
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 1e-62 60
Z1638 NP_287141.1 transposase Not tested TAI Protein 2e-64 60
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 7e-65 60
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 6e-65 60
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 4e-65 60
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 6e-63 59
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 6e-63 59
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 6e-63 59
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 4e-62 59
CDCE8392_1774 YP_005134308.1 transposase-like protein Not tested Not named Protein 5e-37 55
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 2e-50 54
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 2e-36 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSM_B0346 YP_004065293.1 putative transposase ORFB VFG1715 Protein 4e-47 61
PSM_B0346 YP_004065293.1 putative transposase ORFB VFG1602 Protein 2e-62 59