Gene Information

Name : CKC_00405 (CKC_00405)
Accession : YP_004062320.1
Strain : Candidatus Liberibacter solanacearum CLso-ZC1
Genome accession: NC_014774
Putative virulence/resistance : Unknown
Product : ribonuclease PH
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG0689
EC number : -
Position : 84261 - 85013 bp
Length : 753 bp
Strand : -
Note : COG0689 RNase PH

DNA sequence :
ATGGTTATGCGCTTATTGGGTCGGAAAGAAAATCAAATGCGGGAGATATCATTTACAAGGGGGATTTCTAAGCATGCTGA
AGGATCTTGTTTGGTAAAGTTTGGTGAAACGCATTTGCTAACAACTGCTACTCTTGAAGAAAAAGTGCCAATTTGGCTTC
GCAATACAAAGAACGGATGGATAACAGCAGAATATGGAATGTTACCACGTTCGACAGGAAGTCGCATTAAACGCGAAGCC
GTTAGTGGAAGGCAAGGAGGGCGCACGCAAGAGATACAGCGTCTTATAGGGCGTTCACTGCGTTCAATCGTCGATCTTTC
GGCTTTAGGCCCCCGGCAGATTATTATAGACTGTGATGTTATTCAAGCTGATGGAGGAACACGTACTGCTGCCATCACTG
GGGCATGGATTGCTTTACATGATTGCTTGCAACATATGGAAGATCGTAATAGTAAATTTCAATTATCACAAGTTCTTAAA
GGTCATGTAGCGGCGATATCTTGTGGGATTTTATCTGGGAATCCTATCGTAGATCTTAATTATGAGGAAGATTCTAGCAT
CGATGCTGATGCCAATTTTGTAATGACCGATGCTGGTAATATAGTGGAAATACAAGTTTCTGCAGAAAAGGCAACTTTTT
CTCAGGATCAGTTTTTCTCCATGCTTAATTTAGCAAAAGATAGAATTTCTGATCTGATAAGGTTGCAGAAAGATGTAATA
TCTGGTGGAGATCACATTAGATGCGTAAGCTAG

Protein sequence :
MVMRLLGRKENQMREISFTRGISKHAEGSCLVKFGETHLLTTATLEEKVPIWLRNTKNGWITAEYGMLPRSTGSRIKREA
VSGRQGGRTQEIQRLIGRSLRSIVDLSALGPRQIIIDCDVIQADGGTRTAAITGAWIALHDCLQHMEDRNSKFQLSQVLK
GHVAAISCGILSGNPIVDLNYEEDSSIDADANFVMTDAGNIVEIQVSAEKATFSQDQFFSMLNLAKDRISDLIRLQKDVI
SGGDHIRCVS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
rph YP_001800860.1 ribonuclease PH Not tested Not named Protein 7e-45 49