Gene Information

Name : CKC_05620 (CKC_05620)
Accession : YP_004063357.1
Strain : Candidatus Liberibacter solanacearum CLso-ZC1
Genome accession: NC_014774
Putative virulence/resistance : Virulence
Product : ABC transporter membrane spanning protein (iron)
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 1197699 - 1198544 bp
Length : 846 bp
Strand : +
Note : COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components

DNA sequence : 
ATGGTTACTTATGCAACACAATACCCTCTTTTTGATCTTCTTCTAGAGCCTTTTACATACAATTATATGACTACAGCTAT
TTGGATTAGCATGGTAATAGGATGCGTCTGTGGACTCTTATCATCATATTTAATATTGAAAGGTTGGTCTTCCATTGGAA
ATGGAATTTCACATGCAATTTTCCTTGGAATAGTTGGTTGCTACAAATTAGGGATTCCCATGTCTATTGGCGCTACTGTG
TCAGGAATGTTGGCAACTAGCTTAATGATAAAAATAAAAGAAAAAACGAAATTACGGGAAGATGTATCCATAGCTGTGGT
TTATCTCATATTCTATTCCTTTGCTATGTTCTTTTTATCACTATCACCAAACGATGTTTATATAGAAAGTGTCTTTCTAG
GAAATGTCCTGTTTCTGAGTAAAGCCGATATCTTACAAGTCTTGTTTATAGCTTTCTTAGTTTTATCCATCGTATTAATA
AAACGGAAAGATTTTATTCTTTTGTTCTTCGATGAAGCGCATGCTCATTCCATAGGAATGAATGTAAAATTTTTAAAAAA
TCTATTTTTTGCTTTACTAACCATCACAGTAGTTGTTGGCCTCCAAACAGTTGGTCTATTACTTGTCATAGCAACAGTTA
TAACGCCTGGTGCTACTGCTAGATTGTTGACTAAATCCTTTGGATCATATCTTTTTCTAAGCTCTTTCTTAGGCGCAGCC
AGTGGCTTCTTTGGTGCGTATACAAGTTATTTTCTAGACTGTGGACCAGGAGGAATGATTGTCTTAATAGAAACTGCTTT
GTTTTTACTATCGCTACTCTATTTTAAACAATGTAAGACACGATAG

Protein sequence : 
MVTYATQYPLFDLLLEPFTYNYMTTAIWISMVIGCVCGLLSSYLILKGWSSIGNGISHAIFLGIVGCYKLGIPMSIGATV
SGMLATSLMIKIKEKTKLREDVSIAVVYLIFYSFAMFFLSLSPNDVYIESVFLGNVLFLSKADILQVLFIAFLVLSIVLI
KRKDFILLFFDEAHAHSIGMNVKFLKNLFFALLTITVVVGLQTVGLLLVIATVITPGATARLLTKSFGSYLFLSSFLGAA
SGFFGAYTSYFLDCGPGGMIVLIETALFLLSLLYFKQCKTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_461784.1 permease Virulence SPI-1 Protein 3e-41 46
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-41 46
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-41 46
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 2e-41 46
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-41 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CKC_05620 YP_004063357.1 ABC transporter membrane spanning protein (iron) BAC0351 Protein 1e-41 46
CKC_05620 YP_004063357.1 ABC transporter membrane spanning protein (iron) BAC0441 Protein 4e-38 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CKC_05620 YP_004063357.1 ABC transporter membrane spanning protein (iron) VFG0527 Protein 1e-41 46