Gene Information

Name : CKC_05615 (CKC_05615)
Accession : YP_004063356.1
Strain : Candidatus Liberibacter solanacearum CLso-ZC1
Genome accession: NC_014774
Putative virulence/resistance : Virulence
Product : ABC transporter nucleotide binding/ATPase protein (iron)
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 1196924 - 1197670 bp
Length : 747 bp
Strand : +
Note : COG1121 ABC-type Mn/Zn transport systems, ATPase component

DNA sequence : 
ATGAGTAAATATTCCTCCACAAAATATGGGATAGAAGTTAAAGATGTGTCGGTTACATATCGTAATGGCTATCGTGCTTT
AAAAAATATTAGCTTTTCTATTCCTGACAATACAATCACAGCATTAATTGGAGTTAATGGAGCAGGCAAGTCTACTTTAT
TCCAATCTATTATGGGCTTTATTCCAATAGATAAGGGATCTATATCTATTTTTAATAATACTGTAGAAAATGCACTTAAA
GGCGATATGATCTCATATATACCTCAAGTAGAATCTATAGATTGGACTTTTCCTATTCTCGTAGAAGACGTTGTAATGAT
GGGTCGTTATAGGCATATGAATTGGTTGCGTATACCTTCAATTGACGACCATCGCATCGTAACAGAGGCGTTGGAAAACG
TAGGGATAACTTTTATGCGCAAAAGACAAATTGGCGAACTTTCTGTGGGGCAACAAAAACGTGTGTTCCTTGCGCGTGCT
CTCGCCAAAAAAAGTAGGGTCATTATATTAGATGAACCTTTTGCAGCGATTGATTTTAAGACAGAACGAGAAGTCATTTC
TCTCCTACAAGAATTGCGCAATGAAGATAGGATGATATTGGTTTCTACGCATAATATTAACTCCGTCCCTTCTTTTTGCG
ATCAGACTATTTTTTTAAAACAAACAATAATATCTTATGGTTTGACATCGGATACTTTCAATAAAGAAAATATTAAAAAA
ACATTTGGAGTTGAAGAATATCAATAA

Protein sequence : 
MSKYSSTKYGIEVKDVSVTYRNGYRALKNISFSIPDNTITALIGVNGAGKSTLFQSIMGFIPIDKGSISIFNNTVENALK
GDMISYIPQVESIDWTFPILVEDVVMMGRYRHMNWLRIPSIDDHRIVTEALENVGITFMRKRQIGELSVGQQKRVFLARA
LAKKSRVIILDEPFAAIDFKTEREVISLLQELRNEDRMILVSTHNINSVPSFCDQTIFLKQTIISYGLTSDTFNKENIKK
TFGVEEYQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-67 54
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 2e-67 54
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 6e-67 54
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 6e-67 54
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 3e-67 54

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CKC_05615 YP_004063356.1 ABC transporter nucleotide binding/ATPase protein (iron) BAC0440 Protein 2e-64 55
CKC_05615 YP_004063356.1 ABC transporter nucleotide binding/ATPase protein (iron) BAC0350 Protein 1e-67 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CKC_05615 YP_004063356.1 ABC transporter nucleotide binding/ATPase protein (iron) VFG0526 Protein 1e-67 54