Gene Information

Name : CKC_05610 (CKC_05610)
Accession : YP_004063355.1
Strain : Candidatus Liberibacter solanacearum CLso-ZC1
Genome accession: NC_014774
Putative virulence/resistance : Virulence
Product : periplasmic solute binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 1196028 - 1196927 bp
Length : 900 bp
Strand : +
Note : COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin

DNA sequence : 
ATGTTTCGTTGTTTTTCATATTTATTTTTCATATATTTTATGTTTTTTCCAATATCGCCATCTACCGCCCAACAAAAGAA
AATAGTGTTATCAAGCTTTTCTGTTATTACAGATATAACAAAAAATATTGCCAAAAATTTAGTTGTAGCGACTACTATAG
TTGGACCTGGGAACGATGCTCACGAGTATCAAATCACAGCTTCAGATGCAATCAAAATAAAAGAAGCAGATCTCATCTTG
TGCAATGGCTTGAAGCTTGAAGAAAGTTTCATGAAATATTTTGTTAATTTAAAAAAAGATACTAAATTGATTACAGTCAC
TGATGGGATAACGCCTATTAGTATGTCAGACAATGCAAATGATCCTTACAAAGATCCCAATCCTCACTCATGGGTATCTA
TTAAAAACGTAGCGATTTATATCCAAAATATTAGCAAAGCATTAAAAGAGTTAGATCCTGGAAATGCCGAAGAATACGAA
CGCAACGCGAAGGAATATATACAAAAAATAGAAGAAGTACTATTGCCTTTAAAAGATAGAATTGATAATCTTAGCCCTGA
AAAACGCTGGTTTGTGACTAGCGAAGGATGCTTGGTATACTTAGCAAGAGATCTGAATTTAAAAGTACTATATCTTTGGC
CCGTTAATTCCGCTTTTGAACGGAGTCCTTTAAAAATCCGTGATGCAATCAATCAAATACGTAAGCACAAGATTAGATTT
ATTTTTTCAGAAAGTACCAATTCTGATCAACCTGCTAAACAAATCGCCCGTGATACTAACGCATCTTATGGAGGAGTTTT
ATATATAGATACTATTAGCAAATCTAATGGACCAGCACCAACTTATCTGGACTTACTTAAATACAATCTAACACTAATTG
CAGATCGTTTATCACAATGA

Protein sequence : 
MFRCFSYLFFIYFMFFPISPSTAQQKKIVLSSFSVITDITKNIAKNLVVATTIVGPGNDAHEYQITASDAIKIKEADLIL
CNGLKLEESFMKYFVNLKKDTKLITVTDGITPISMSDNANDPYKDPNPHSWVSIKNVAIYIQNISKALKELDPGNAEEYE
RNAKEYIQKIEEVLLPLKDRIDNLSPEKRWFVTSEGCLVYLARDLNLKVLYLWPVNSAFERSPLKIRDAINQIRKHKIRF
IFSESTNSDQPAKQIARDTNASYGGVLYIDTISKSNGPAPTYLDLLKYNLTLIADRLSQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 9e-58 45
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 7e-58 45
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 7e-58 45
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 7e-58 45
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 6e-58 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CKC_05610 YP_004063355.1 periplasmic solute binding protein BAC0439 Protein 6e-59 46
CKC_05610 YP_004063355.1 periplasmic solute binding protein BAC0349 Protein 3e-58 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CKC_05610 YP_004063355.1 periplasmic solute binding protein VFG0525 Protein 3e-58 45