Gene Information

Name : CKC_05180 (CKC_05180)
Accession : YP_004063270.1
Strain : Candidatus Liberibacter solanacearum CLso-ZC1
Genome accession: NC_014774
Putative virulence/resistance : Unknown
Product : single-strand binding protein (ssb)
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0629
EC number : -
Position : 1107907 - 1108374 bp
Length : 468 bp
Strand : -
Note : COG0629 Single-stranded DNA-binding protein

DNA sequence :
ATGGTGGCAAGTGTCAATAAAGTTATTTTGATAGGAAATCTCGGAGCAGATCCAGATGTACGGCATACACAAGATGGGCG
TAGAATTGTCAATATTCGTGTTGCTACTTCTGAAAATTGGAAAGATCGTGTTACAGGTGAACGTCGTGAGAAAACGGAAT
GGCATTCTGTCGTTGTTTTTGTTGAAGAACTTGGAAAAGTAGTTGAACAATATCTTAAAAAGGGTTCTAAAGTTTATATA
GAAGGTTCGATTCAAACTCGAAAGTGGCAAGACCAATCTGGTAATACTCGCTATACAACTGAGATTATTATGCGTAATAT
GGTTATGTTAGATGGGCGTAAAGATTCTCCTCAAGGGAATCAAGAGAACAACGACAATTCTAAGGACAATATTGTTGAAA
ATCGCTATTCATCTCTATCAAAAGATAATGTATTCTCTGATGATCTTGACGATGAGATTCCATTTTAG

Protein sequence :
MVASVNKVILIGNLGADPDVRHTQDGRRIVNIRVATSENWKDRVTGERREKTEWHSVVVFVEELGKVVEQYLKKGSKVYI
EGSIQTRKWQDQSGNTRYTTEIIMRNMVMLDGRKDSPQGNQENNDNSKDNIVENRYSSLSKDNVFSDDLDDEIPF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssb1 YP_005176252.1 single-stranded DNA-binding protein Not tested ICEPmu1 Protein 6e-25 49
ssB NP_458627.1 single strand binding protein Not tested SPI-7 Protein 2e-24 43
ssb NP_807839.1 single-stranded DNA-binding protein Not tested SPI-7 Protein 2e-24 43
ssb AAF14810.1 single strand binding protein Not tested SPI-7 Protein 1e-24 43