Gene Information

Name : Ocepr_1827 (Ocepr_1827)
Accession : YP_004058452.1
Strain : Oceanithermus profundus DSM 14977
Genome accession: NC_014761
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1844126 - 1844806 bp
Length : 681 bp
Strand : +
Note : COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439: IPR017871: IPR003593; KEGG: msv:Mesil_0217 ABC transporter; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter; PFAM: ABC transporter

DNA sequence : 
ATGCTGCGCGCGGAGAACCTGACCAAACGCTACCGCCAGGGCAGCGTCACCGTGACCGCCCTGGAAGGGTTCAGCTACGA
GTTTCCCCCCGGTCCGACGGCCGTGGTGGGGCCGAGCGGATCCGGCAAGACGACGTTGCTCAACCTGCTCGCGGGCTTCG
ACCTGCCCACCGAGGGCGAGGTCGAGCTGGGGGGCGCCCGCCTCGACCGCCTGGGCGAGGACGAGCGCGCCGGGGTGCGG
CTCGAGCAGGCGGGGTTCGTCTTCCAGAGCTGGAACCTGCTGCCCACCCTGACGGCCCTCGAGAACGTCGCCTTCCCCCT
GCTGCTCGCGGGGGTGGCGGCGGGGGTGCGGCGCGAACGGGCCATGGCGCTGCTCGAGCAGGTGGGGCTCGCGGACCGCG
CCCACCACCGACCCAACCAGCTCTCCGGGGGCGAGCAGCAGCGCGTGGCCATCGCCCGGGCGCTGGCGCTCGAACCCGCG
GTGCTCTTCGCCGACGAACCCACGGGCAACCTCGACTCCGCCGCCGGGCACCGGGTGCTCGATCTGCTGCTGGAGCACGC
CGTCGGCGAGCGCCGGCTCGTCCTCGTCACCCACGACCTCGAGATCGCCGCCCGCGCGGAACGGGTGCTGCACCTGCGCG
ACGGCCGGCTCGTCAAGATCGAGGAGCCCGCCGCCGTCTAG

Protein sequence : 
MLRAENLTKRYRQGSVTVTALEGFSYEFPPGPTAVVGPSGSGKTTLLNLLAGFDLPTEGEVELGGARLDRLGEDERAGVR
LEQAGFVFQSWNLLPTLTALENVAFPLLLAGVAAGVRRERAMALLEQVGLADRAHHRPNQLSGGEQQRVAIARALALEPA
VLFADEPTGNLDSAAGHRVLDLLLEHAVGERRLVLVTHDLEIAARAERVLHLRDGRLVKIEEPAAV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-30 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-31 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-31 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-31 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ocepr_1827 YP_004058452.1 ABC transporter NC_008702.1.4606598. Protein 3e-30 49
Ocepr_1827 YP_004058452.1 ABC transporter NC_012469.1.7686878. Protein 3e-35 46
Ocepr_1827 YP_004058452.1 ABC transporter CP001581.1.gene798.p Protein 1e-30 41