Gene Information

Name : Ocepr_1636 (Ocepr_1636)
Accession : YP_004058262.1
Strain : Oceanithermus profundus DSM 14977
Genome accession: NC_014761
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG3842
EC number : -
Position : 1652973 - 1654004 bp
Length : 1032 bp
Strand : +
Note : COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR017871: IPR003439: IPR013611: IPR003593; KEGG: mrb:Mrub_2272 ABC transporter-like protein; PFAM: ABC transporter related; Transport-associated OB domain-containi

DNA sequence : 
ATGAGCCTGCTCGAAGTCCGGGAACTGACCAAGCGCTACGGCCGCCGCACCGCGGTGGAAGACCTCTCCTTCGCCCTCGA
CGCCGGAGAGATCCTGGCCCTGCTCGGCCCTTCGGGAAGCGGAAAGACGACGACGCTGCGGCTGATCGCCGGTTTCGAGC
GGCCCGACGGGGGGTGGCTGCGCCTGGACGGCCGGCTGCTCGGCACCCCCGGGCGCCAGCTGCCGCCGGAGCGCCGGGGC
ATCGGCTACGTCTTCCAGGAGTACGTGCTCTTTCCCCACCTCAACGTCTACGAGAACGTGGCCTTCGGCCTCCGCCGCAT
CCCCGCGCGCGAGCGGCGCGAACGAACCCAGCGGGTGCTCGAGCAGGTCGGTCTGACCGCCTTCGCCCGACGCTACCCCC
ACGAGCTCTCGGGCGGGCAGCAGCAGCGCGTCGCCCTCGCGCGGGCCCTCGCCCCCGAACCCCGACTCGTCCTCCTCGAC
GAACCCTTCTCCAGCCTGGACGCCGCGCTGCGCGAGGGCACGCGCAGCGAGGTGCTCGGCCTGCTCCGGCGTCGGGGCGT
GGGAACGCTGCTCGTCACCCACGACCAGGAGGAGGCGCTCGCCGCGGCCGACCGGATCGCGGTGCTGCGGGAAGGCCGCA
TCGAACAGATCGGGACGCCGGAAGAGGTCTACCACCGCCCGCGGACGGCGTTCGTGGCCCATTTCCTGGGGAGCACGAAC
CTCCTCAGCGGGACCGCGCGCGGGCGGGTGGCCGACACGCCCTTGGGCCCGATCGAGCTCGACCGCGCCGCCGAGGGCCG
GGTGCTGCTCTCGCTGCGCCCCGAACACCTCGAACTCGGCGCGGAGGGCGCCCCGGTGGTGGTGGAGGCGCGCTACTTCA
AAGGCCACGACGTGACCCTGCAGGTCCGGGGCCCCGCGGGAAGCTTCCGCGTGCAGGCGGACTACCGGCTCCCCTTCCGC
CCCGGCGACGCGGCGCGGCTGCGGGCCCGCGAGCGGGCCGTCGTGCTGGCGTCGCCCGCGGAGCGACGCTGA

Protein sequence : 
MSLLEVRELTKRYGRRTAVEDLSFALDAGEILALLGPSGSGKTTTLRLIAGFERPDGGWLRLDGRLLGTPGRQLPPERRG
IGYVFQEYVLFPHLNVYENVAFGLRRIPARERRERTQRVLEQVGLTAFARRYPHELSGGQQQRVALARALAPEPRLVLLD
EPFSSLDAALREGTRSEVLGLLRRRGVGTLLVTHDQEEALAAADRIAVLREGRIEQIGTPEEVYHRPRTAFVAHFLGSTN
LLSGTARGRVADTPLGPIELDRAAEGRVLLSLRPEHLELGAEGAPVVVEARYFKGHDVTLQVRGPAGSFRVQADYRLPFR
PGDAARLRARERAVVLASPAERR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
opuBA YP_005124363.1 choline transport system ATP-binding protein Not tested Not named Protein 1e-17 41
opuBA NP_938494.1 choline transport system ATP-binding protein Not tested Not named Protein 2e-18 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ocepr_1636 YP_004058262.1 ABC transporter BAC0162 Protein 2e-33 43
Ocepr_1636 YP_004058262.1 ABC transporter BAC0604 Protein 1e-26 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ocepr_1636 YP_004058262.1 ABC transporter VFG1206 Protein 1e-30 46
Ocepr_1636 YP_004058262.1 ABC transporter VFG0344 Protein 2e-33 43