Gene Information

Name : Ocepr_1578 (Ocepr_1578)
Accession : YP_004058204.1
Strain : Oceanithermus profundus DSM 14977
Genome accession: NC_014761
Putative virulence/resistance : Resistance
Product : cys/met metabolism pyridoxal-phosphate-dependent protein
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG0626
EC number : -
Position : 1614922 - 1616103 bp
Length : 1182 bp
Strand : -
Note : COGs: COG0626 Cystathionine beta-lyase/cystathionine gamma-synthase; InterPro IPR000277; KEGG: tra:Trad_2517 Cys/Met metabolism pyridoxal-phosphate-dependent protein; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; SPTR: Cys/Met metabolism

DNA sequence : 
ATGAAACGTTTCCGTACCCGTGCGCTGCACGTGGGTTCGCGGCCCGACCCCGCCACCGGGGCCCACGTCACCCCCGTGTA
CCGCACGTCCACGTTCGCGTACGGATCCTTCGACCGCGGCGCGCGAATGTTCGCGGGCGAAGAGTCCGGCTACGTCTACA
CCCGCATCGGCAACCCCACGGTGCGGGTGTTCGAAGAGAAGCTGGCGAGCCTCGAGGGCGCCGAGGACGCGGTGGCCTTC
GCCAGCGGCATGGCGGCGATCGCGGCGCTGACCCTGACCTTCCTGCAGCCGGGCGACGAGCTGGCCTTCCTCGGCCCCCT
CTACGGCGGCACCGAGGGGCTCTTCCTGGAGACGCTCGCGCGTTTCGGCATTCAGGTGCGCGACGTTTCCGAGGAGCCGC
CCGCGGCGTGGGTGGGCCCCAAGACCCGGATGCTCTACGTGGAGACGCCCACGAACCCGACGCTGCGCATCCACGACCTG
GCGCAGGTCGGCGAGGTGGGGCGCGCGCACGGGGTGCTGACCGTCGCCGACAACACCTTCGCCACCCCCTACCTGACGCG
GCCGCTCGAGTTCGGGCTGGACGTGGTGGTGCACTCGGCGACCAAGTACCTGGGGGGCCACGGCGACGCGATCGGCGGCG
TGGTCGCGGGGCCCGGGGAGATGATGCAGGAGCTGCGGATGCACGGTCTGCGCCACGTCGGCGGGGCGATGAGCCCCGAG
GACGCCTTCCTCTTCATGCGGGGAATCAAGACGCTGGCGCTCCGCATGGAGGCCCACTGCGACGGCGCCGAGGCCGTGGC
CGCCTACCTGGCCCGCCACCCGGCGGTGGCCCGGGTCTACTACCCTGGGCTGCCCCAGCACCCCGGGCACGAGGTCGCCG
CGCGGCAGATGGACCGCTACGGCGGGATGGTGGCCCTCGAGCTGCACGGCGGCTTCGACGCGGCCCGCGTCTTCCTCGAC
GGCCTCGAGCTCTTCACCCAGGCGGTCTCCCTGGGCGACGTCGAGTCGCTGGCCACCCACCCGGCGAGCACCACCCACGA
GCTACTGCCGCCCGAGGTGCTCGAGCGCCAGGGGATCACCCCCGGGCTGGTGCGGCTCTCGGTGGGGATCGAGGACCCGC
GCGACCTGACCGAGGACCTGGAGCAGGCCCTCGCGCGCGTCGAGCGCAGCCTCGTCTCCTGA

Protein sequence : 
MKRFRTRALHVGSRPDPATGAHVTPVYRTSTFAYGSFDRGARMFAGEESGYVYTRIGNPTVRVFEEKLASLEGAEDAVAF
ASGMAAIAALTLTFLQPGDELAFLGPLYGGTEGLFLETLARFGIQVRDVSEEPPAAWVGPKTRMLYVETPTNPTLRIHDL
AQVGEVGRAHGVLTVADNTFATPYLTRPLEFGLDVVVHSATKYLGGHGDAIGGVVAGPGEMMQELRMHGLRHVGGAMSPE
DAFLFMRGIKTLALRMEAHCDGAEAVAAYLARHPAVARVYYPGLPQHPGHEVAARQMDRYGGMVALELHGGFDAARVFLD
GLELFTQAVSLGDVESLATHPASTTHELLPPEVLERQGITPGLVRLSVGIEDPRDLTEDLEQALARVERSLVS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
metB YP_281510.1 cystathionine beta-lyase Not tested Not named Protein 2e-56 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ocepr_1578 YP_004058204.1 cys/met metabolism pyridoxal-phosphate-dependent protein BAC0207 Protein 4e-84 50