Gene Information

Name : Ftrac_3424 (Ftrac_3424)
Accession : YP_004055506.1
Strain : Marivirga tractuosa DSM 4126
Genome accession: NC_014759
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 4030050 - 4030748 bp
Length : 699 bp
Strand : +
Note : COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439: IPR017871: IPR003593; KEGG: cpi:Cpin_0956 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: ABC transport system, ATP-bindin

DNA sequence : 
ATGGATCATGTAATTAAAACGGTTGATTTAACGAAGCTTTATACTACTGAGGAGGTGGAGACTACGGCTTTGAATAATAT
CAATATTGAAATCAAAAAGGGCGAATTTGTCGCTATAATGGGACCCTCGGGTTGTGGGAAATCTACTTTGCTCAATATTT
TGGGCTTGTTGGATAATCCTAACTCGGGTGAATACCATTTTGTAGATCATGAAGTGGCTAAATATTCAGAACGCCAACGA
GCACAACTGAGAAAAGGCTCTATCGGATTCGTTTTTCAAAGCTTTAACCTGATTGACGAGCTGACGGTATTTGAAAATGT
AGAGTTGCCATTGCTTTATATGAAAGTGCCTTCTTCGGAAAGAAAAACCAAAGTAGAAGAAGTGCTGACCCGCATGAACA
TTATGCACAGGCGAAATCACTTTCCGCAGCAATTGTCCGGTGGACAGCAGCAAAGGGTGGCCATTTCCAGAGCCATTGTA
GCCAAGCCAGATGTAATCCTTGCCGATGAGCCGACCGGTAACTTGGATTCAGCCAATGGCGAGGAAGTAATGAAATTATT
GGAGCAATTGAATAATGAAGGCACCACCATCGTGATGGTAACGCACTCCCCACATGATTCCAATTATGCGCACAGAGTCA
TCAATTTATTCGATGGCCAAGTGGTTACAGAAAATATCAGAGAGCAATTTCATGTGTGA

Protein sequence : 
MDHVIKTVDLTKLYTTEEVETTALNNINIEIKKGEFVAIMGPSGCGKSTLLNILGLLDNPNSGEYHFVDHEVAKYSERQR
AQLRKGSIGFVFQSFNLIDELTVFENVELPLLYMKVPSSERKTKVEEVLTRMNIMHRRNHFPQQLSGGQQQRVAISRAIV
AKPDVILADEPTGNLDSANGEEVMKLLEQLNNEGTTIVMVTHSPHDSNYAHRVINLFDGQVVTENIREQFHV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 2e-35 41
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 7e-36 41
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-34 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-35 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-35 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-35 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ftrac_3424 YP_004055506.1 ABC transporter NC_012469.1.7686878. Protein 2e-53 50
Ftrac_3424 YP_004055506.1 ABC transporter CP001581.1.gene798.p Protein 6e-38 47
Ftrac_3424 YP_004055506.1 ABC transporter NC_008702.1.4606598. Protein 2e-43 45
Ftrac_3424 YP_004055506.1 ABC transporter NC_012469.1.7686946. Protein 4e-31 44
Ftrac_3424 YP_004055506.1 ABC transporter CP001581.1.gene598.p Protein 3e-36 43
Ftrac_3424 YP_004055506.1 ABC transporter NC_012469.1.7685735. Protein 2e-37 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ftrac_3424 YP_004055506.1 ABC transporter VFG0869 Protein 3e-23 43
Ftrac_3424 YP_004055506.1 ABC transporter VFG2059 Protein 4e-18 41