Gene Information

Name : Ftrac_1658 (Ftrac_1658)
Accession : YP_004053754.1
Strain : Marivirga tractuosa DSM 4126
Genome accession: NC_014759
Putative virulence/resistance : Virulence
Product : nad-dependent epimerase/dehydratase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0451
EC number : -
Position : 1989154 - 1990116 bp
Length : 963 bp
Strand : -
Note : COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR008089: IPR001509: IPR020904; KEGG: hmg:100202205 similar to UDP-glucuronate decarboxylase 1; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase family pro

DNA sequence : 
ATGTCGCAAAAGAAAATCATAATTACAGGAGGAGCAGGATTTATAGGATCAAATTTGGTTGAAAAATACCTTAATGATGA
TAGAGTAGAAAAAGTAAGAGTGATTGATAACCTTTCCAATGGATACTATAGTAATATAGAGGAATTTGAAAGCCATCCAA
AATTTGAGTTTTTCAAAGAAGACATTTGCGATTATGATAAAATGCTTGAGCTGACCGGAGGCTTTGATTTAATCAGTCAT
CAAGCAGCTTTGGGTTCTGTTCCCCGATCAATTGAAAACCCAATGCAGAGCACTAAAGTCAATATTGATGGGACGGTTAA
TATTTTGTATGCCGCGGTTCAGAATAAAATTGATAGAGTGGTTTTGGCTTGTTCATCAAGTACTTATGGTGATAGTCCGA
GTTTGCCTAAGCAAGAAGATATAATTGGTAATCCTCTAAGTCCTTATGCAGTTACAAAATATGCGGTAGAGTTATATGCA
GAGGTTTTTCAAAAGACTTATGGCTTAAATTATGTGGGACTACGGTACTTCAATATTTTCGGTCCAAGGCAAAATCCTGA
TAATCCTTATGCGGCCGTAATTCCTATTTTCTGCAAAGCTTTTATTCATGGTAATGAGCCAACTATTAATGGTGATGGTG
AAACTAGCAGAGATTTTACGTTCGTGGAAAATGCTGTTCATGCCAATGATTTGGCTCTTTTTACAGAAAATAAGCAAGCT
TTGAATCAAATATACAATGTGGCTTGTGGAGATCAAATGAGTCTTAATGATATGATTGGTTTATTGCAGGAGTTAAGTGG
GATAGATTTAAAGCCTAATTATGGACCTGAGAGACCTGGAGATGTCAAGCATTCCAAAGCCGACATCTCTAAAATTGAAA
ATCTTTTAGGCTATAAACCTCAGGTTAGGTTTAAAGAAGGCTTAGGAAAAGTGTATGGCTGGTATGAGAAAATGGGGTTT
TAA

Protein sequence : 
MSQKKIIITGGAGFIGSNLVEKYLNDDRVEKVRVIDNLSNGYYSNIEEFESHPKFEFFKEDICDYDKMLELTGGFDLISH
QAALGSVPRSIENPMQSTKVNIDGTVNILYAAVQNKIDRVVLACSSSTYGDSPSLPKQEDIIGNPLSPYAVTKYAVELYA
EVFQKTYGLNYVGLRYFNIFGPRQNPDNPYAAVIPIFCKAFIHGNEPTINGDGETSRDFTFVENAVHANDLALFTENKQA
LNQIYNVACGDQMSLNDMIGLLQELSGIDLKPNYGPERPGDVKHSKADISKIENLLGYKPQVRFKEGLGKVYGWYEKMGF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 3e-54 46
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 3e-54 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ftrac_1658 YP_004053754.1 nad-dependent epimerase/dehydratase VFG0430 Protein 1e-54 46