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Name : Calni_0406 (Calni_0406) Accession : YP_004050482.1 Strain : Calditerrivibrio nitroreducens DSM 19672 Genome accession: NC_014758 Putative virulence/resistance : Virulence Product : type II secretion system protein e Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 409385 - 411067 bp Length : 1683 bp Strand : + Note : COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR001482: IPR007831: IPR003593; KEGG: ddf:DEFDS_1256 type IV pilus assembly protein PilB; PFAM: type II secretion system protein E; General secretory sys DNA sequence : ATGGATGTAAGAAAGAAGATCAGAATTGGGGAGCTTTTAAAAGAAAAAAATCTTATCACCGAAGCGCAGCTGAAGGTTGC TTTGAATGAACAGCAAACGAGCGGTAAAAAATTGGGGGAGGTTTTAGAGGACTTAGGATATGTAACTGAAAAACAGTTAT TACAGGTTATATCTGAGCAGCTTGGTACAAAGATCATAAAAGCATCTGATGTGGAGATTAATCCCGATCTAAAAAAGCTC ATTCCTGAAAATATTGCAAGAAAATTGAAAGTTGTCCCAATTAAGATAGATGACAAAAGGGTATTCATAGCCACAAATGA TCCGGCCAATGTCAACATTTATGATGAACTCGAACGGATGCTTAGAAAGGAGGTCTACCCGTTTGTTGTTACAAAGGATG ACCTGCTTTATCTTCTGGAAAAGGTTTATGGGACGGAGGATCGCCTTTACAAAACCGCAGAAGATGTCACCAAAAAACTT GCCGCAACCCGTGAGGAAACCCTCGAAAACCTTGCGGAGGATACCCCAGTCATAAATCTTGTGGATGGTATAATTCACAA AGCTGTTTCTGATAGGGCAAGCGATATACATATAGAGCCGGATGAGGATAAACTGAGGATAAGATATAGGATAGATGGCG TATTAATAGAGGTTTTGGGGTTAAATAGAAATATTCATCCGGCAATCGTATCAAGAATCAAAATTATGTCCGGGATGAAT ATTGCTGAGAAAAGGATACCTCAGGATGGCAGATTTAAGGTTTCAAGCGGAGGAAGAGATGTGGATTTTAGGGTGTCCAC ATTACCTACAAATTTTGGGGAGAAGGTTGTTTTGAGAATTCTTGATAGGAGTAAGGCGTTACTTGAATTGCACAACATAG GGATGGATCCCCATAGTTTATCAGTGTATGAAAGTATCGTCGCGAAGCCTTACGGTATTATCCTGATATCAGGTCCCACT GGTAGCGGTAAAACTACAACCCTTTATGCCACATTAAACAAGCTTAATACTCCTGATAAGAATATTGTAACAGTTGAAGA TCCTATAGAATACAATTTTAGATTGATAAATCAGGTGCAAACCGATGAAACAGCAGGTCTTACATTTGCCAATGCACTGA GATCGATTTTACGTCAGGATCCTGACATCATTATGGTGGGTGAGATAAGGGATAAGGAGACTGCTGAAATAGCTATCCAG GCTTCCCTTACAGGTCATCTTGTGCTATCCACTATTCATACGAATGACGCCGTAAGCTCTGTGGTGAGATTGGTGGATAT GGGGATAGAAAACTTTCTGGTGGCCACATCCCTGATAGGTGTGGTGGGGCAGAGGCTCGTAAGGAAGATATGTGAACATT GCAAACAGGAGTACATCCCGGAGCCGGAAATGCTTGAAAGACTTAAGATAAAGGATAATGGGATAAAATTTTATCGGGGT GCAGGTTGTCCCGAATGTAAGTACACAGGTTATTCCGGAAGGATTGGTATATACGAGGTTTTAAAAATAGATGGGGCTAT AAAGCAGATGATTACCAAAGGTAAAAGCGTGGAAGAAATAAGAAGCTATGCGTTGAAAAACGGCTTTAAAAGTATGTTTG ATGGGGGCTTTGAGATAGTAAAATCAGGCATTACCACTATTGAAGAATTGCTTAGAGTCACTGTCATTTCTGGTGAAGAT TAA Protein sequence : MDVRKKIRIGELLKEKNLITEAQLKVALNEQQTSGKKLGEVLEDLGYVTEKQLLQVISEQLGTKIIKASDVEINPDLKKL IPENIARKLKVVPIKIDDKRVFIATNDPANVNIYDELERMLRKEVYPFVVTKDDLLYLLEKVYGTEDRLYKTAEDVTKKL AATREETLENLAEDTPVINLVDGIIHKAVSDRASDIHIEPDEDKLRIRYRIDGVLIEVLGLNRNIHPAIVSRIKIMSGMN IAEKRIPQDGRFKVSSGGRDVDFRVSTLPTNFGEKVVLRILDRSKALLELHNIGMDPHSLSVYESIVAKPYGIILISGPT GSGKTTTLYATLNKLNTPDKNIVTVEDPIEYNFRLINQVQTDETAGLTFANALRSILRQDPDIIMVGEIRDKETAEIAIQ ASLTGHLVLSTIHTNDAVSSVVRLVDMGIENFLVATSLIGVVGQRLVRKICEHCKQEYIPEPEMLERLKIKDNGIKFYRG AGCPECKYTGYSGRIGIYEVLKIDGAIKQMITKGKSVEEIRSYALKNGFKSMFDGGFEIVKSGITTIEELLRVTVISGED |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-91 | 46 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-91 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Calni_0406 | YP_004050482.1 | type II secretion system protein e | VFG2048 | Protein | 1e-91 | 46 |
| Calni_0406 | YP_004050482.1 | type II secretion system protein e | VFG1876 | Protein | 1e-97 | 45 |
| Calni_0406 | YP_004050482.1 | type II secretion system protein e | VFG2426 | Protein | 2e-75 | 43 |
