Gene Information

Name : Calni_0039 (Calni_0039)
Accession : YP_004050118.1
Strain : Calditerrivibrio nitroreducens DSM 19672
Genome accession: NC_014758
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 38073 - 38720 bp
Length : 648 bp
Strand : +
Note : COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR017871: IPR003439: IPR003593; KEGG: ddf:DEFDS_1877 ABC transporter ATP-binding subunit; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter, AT

DNA sequence : 
ATGATAGAATTACGAGATGTGTGGAAAAATTATGGTGAGACATCCGTATTAAAAGGGATAAATCTTCATATTTCTGACGG
AGAATTTGTGTCCATTATGGGACCTTCGGGATCTGGTAAAACAACACTTTTAAATATCATAGGTGCAATGGATAGGGTTG
ATGGTGGTAATGTTTTTATAAATGGTATCGATATTACAGGCTTTGATGAAGAGGAATTGACCGATTTCAGGAAAAGGTAT
ATTGGGTTTGTGTTTCAGTTTTTCAACCTTTTTGGTAATCTTACCGTATATGAAAATCTTTTAATACCGCTACTGATATC
AGGGCTGGATAAAAAAGAGCAGATTGTAAAGATTCTTGAAGAATTTGGACTAAAGGATAAGATGTATAAACTTGCCCATC
AGCTATCAGGTGGTGAACAGCAGAGGGTGGCTATTGCCAGGGCTATCGTAAAAGATCCTAAAATAATCCTGGCGGATGAG
CCAACAGGTAGCCTTGATACAATAACAGGGATGAAGATACTTGAAATACTTAAAAGTTTGAATAAAGAACTCAAGACAAC
TATCGTAATAGTTACACATAACGAAGAGATTGCAAGTTTTACCGATAGGATAGTGAGAATCAAAGATGGTAAGATCCTTG
CTGAATAA

Protein sequence : 
MIELRDVWKNYGETSVLKGINLHISDGEFVSIMGPSGSGKTTLLNIIGAMDRVDGGNVFINGIDITGFDEEELTDFRKRY
IGFVFQFFNLFGNLTVYENLLIPLLISGLDKKEQIVKILEEFGLKDKMYKLAHQLSGGEQQRVAIARAIVKDPKIILADE
PTGSLDTITGMKILEILKSLNKELKTTIVIVTHNEEIASFTDRIVRIKDGKILAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 3e-29 45
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-32 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-33 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-33 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-33 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Calni_0039 YP_004050118.1 ABC transporter CP001581.1.gene598.p Protein 2e-43 46
Calni_0039 YP_004050118.1 ABC transporter CP001581.1.gene798.p Protein 1e-41 46
Calni_0039 YP_004050118.1 ABC transporter NC_012469.1.7686878. Protein 4e-43 46
Calni_0039 YP_004050118.1 ABC transporter NC_012469.1.7685735. Protein 2e-41 42
Calni_0039 YP_004050118.1 ABC transporter NC_008702.1.4606598. Protein 5e-36 41