Gene Information

Name : Calni_1894 (Calni_1894)
Accession : YP_004051961.1
Strain : Calditerrivibrio nitroreducens DSM 19672
Genome accession: NC_014758
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1961598 - 1962266 bp
Length : 669 bp
Strand : -
Note : COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593: IPR003439: IPR017871; KEGG: pmx:PERMA_0680 macrolide export ATP-binding/permease protein MacB; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Macr

DNA sequence : 
ATGCCTCTCGTAGAGCTTGATAATATAAAAAAAGAGTATATTGTGGGGGGCAATACCACAAAGGTTTTAAAAGGGATTAC
CCTTTCAATAGATAAGGGTGAGTTTGTTGCTCTGATGGGTCAATCAGGATCTGGTAAGACCACCCTCATGAATATCATTG
GTATGCTTGATACTCCCACAGACGGCAGGTATCTACTGAATGGAAAAGATATTTCAAAAGAGGATGATAATGCGCTTTCC
AGGCTGAGAAATCAGTTTGTGGGATTTATTTTTCAAAGCTTTTACCTGATACCATATTCTACTGTTCTGGAAAATGTGTT
GTTACCCATATACTATTCCGGAAAAGATCTGGCAAAATACACAGATAAGGCTAAGGAACTTTTAAACCAGCTTGGTTTGT
ATGAAAAGAGAAATAATAAGCCCAATCAGCTTTCTGGTGGTCAGCAGCAGAGGGTTGCAATAGCAAGGGCTTTGATAAAT
GACCCTGAAATGATTTTGGCTGATGAGCCCACCGGGCAGCTCGACAGTGAGACAGCGAAAAATATCATGGATTATATTTC
AAAATTAAATGAGCAGGGTAAAACAATTATTCTTGTGACTCATGATCCTGCCACTGCATCTTATGCAAAAAAGATTATTA
AAATTTCGGATGGTTTAATAATAGATTAA

Protein sequence : 
MPLVELDNIKKEYIVGGNTTKVLKGITLSIDKGEFVALMGQSGSGKTTLMNIIGMLDTPTDGRYLLNGKDISKEDDNALS
RLRNQFVGFIFQSFYLIPYSTVLENVLLPIYYSGKDLAKYTDKAKELLNQLGLYEKRNNKPNQLSGGQQQRVAIARALIN
DPEMILADEPTGQLDSETAKNIMDYISKLNEQGKTIILVTHDPATASYAKKIIKISDGLIID

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 5e-31 41
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Calni_1894 YP_004051961.1 ABC transporter NC_012469.1.7686878. Protein 1e-51 52
Calni_1894 YP_004051961.1 ABC transporter CP001581.1.gene798.p Protein 1e-41 47
Calni_1894 YP_004051961.1 ABC transporter CP001581.1.gene598.p Protein 7e-38 43
Calni_1894 YP_004051961.1 ABC transporter NC_008702.1.4606598. Protein 2e-41 42