Gene Information

Name : Calni_1362 (Calni_1362)
Accession : YP_004051433.1
Strain : Calditerrivibrio nitroreducens DSM 19672
Genome accession: NC_014758
Putative virulence/resistance : Virulence
Product : lytic transglycosylase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0741
EC number : -
Position : 1421531 - 1421965 bp
Length : 435 bp
Strand : -
Note : InterPro IPR008258; KEGG: glo:Glov_0964 lytic transglycosylase catalytic; PFAM: Lytic transglycosylase catalytic; SPTR: Lytic transglycosylase catalytic; PFAM: Transglycosylase SLT domain

DNA sequence : 
ATGAAAACATTTTTTTGTTTACTTTTATCCTTTATAAGTAGCGTTGCTTATCCCTACTGTTTTGATGAGGCTGAGAAAAT
CTATAATGTCAATAAAGAGCTTTTGATAGCCATTGCAAAGGTGGAAAGTAATATGAGACCAGATGCCATAAACTGGAACA
GAAATGGTACCTTTGATTATGGAGTGATGCAGATAAATAGTGCGTGGTATTATGAACTTGGGGAAGAAAAATGGCATAAA
CTTGCAGATCCTTGTGAAAACGTTAAGACTGGGGCTATGATTTTATCAAAGTGTATAAAAAAATATGGGTTTAACTGGAA
AGCTGTGGATTGCTACAATAAAGGTTCAAAGGCGAGTGATTTTAGTAGTTATGTATTAAAGGTGTATAAACAGCTCGTTT
CTTCATCCAAGAATAAAAAGGTGATGGATCAGTAA

Protein sequence : 
MKTFFCLLLSFISSVAYPYCFDEAEKIYNVNKELLIAIAKVESNMRPDAINWNRNGTFDYGVMQINSAWYYELGEEKWHK
LADPCENVKTGAMILSKCIKKYGFNWKAVDCYNKGSKASDFSSYVLKVYKQLVSSSKNKKVMDQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iagB NP_457271.1 cell invasion protein Virulence SPI-1 Protein 4e-14 44
iagB NP_806480.1 cell invasion protein Virulence SPI-1 Protein 4e-14 44
iagB YP_217796.1 cell invasion protein Virulence SPI-1 Protein 1e-13 43
iagB NP_461798.1 invasion protein precursor Virulence SPI-1 Protein 9e-14 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Calni_1362 YP_004051433.1 lytic transglycosylase VFG0539 Protein 3e-14 43