Gene Information

Name : Palpr_0909 (Palpr_0909)
Accession : YP_004042044.1
Strain : Paludibacter propionicigenes WB4
Genome accession: NC_014734
Putative virulence/resistance : Resistance
Product : transferase hexapeptide repeat containing protein
Function : -
COG functional category : R : General function prediction only
COG ID : COG0110
EC number : -
Position : 1095224 - 1095859 bp
Length : 636 bp
Strand : +
Note : COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); InterPro IPR018357: IPR001451; KEGG: cyh:Cyan8802_2073 VatB; PFAM: transferase hexapeptide repeat containing protein; SPTR: Virginiamycin A acetyltransferase

DNA sequence : 
ATGACAGGACCAGACAAAGAAAAAGACTTTCCACTTGAGAACTATAACAAGCTCTGCTTTCTGAAAAATATCGTCAAAAA
TCCTAACATAATTGTGGGTGACTATACTTATTACGACGATTTTGAAAATGTGGAGAACTTTGAGAAAAATGTAAAATATC
ATTTTGACTTTATCGGTGACAAGCTTATTATTGGCAAGTTTTGCATGATAGCTTCCGACGTGAAATTCATTATGAATGGA
GCAAATCATTTGACAAACTCATTGACATCATATCCATTTGCAATTTTCGGAAACGGCTGGGAAAATGCAATGAATGGAAA
GCAATACCCTCAAAAAGGAGACATCATTATTGGCAATGATGTTTGGATAGGTTATAACGCAACCATTATGGCTGGCGTAA
CCGTTGGAGACGGAGCGATTATTGCAACAAATTCTACTGTAATTAAAGATGTTGAACCGTATTCAATCGTTGGAGGAAAT
CCGGCAGTTGAAATAAAAAAGAGATTCTCGTCTGAGGAAATTGAAAGATTACTCAAACTAAAATGGTGGGAATGGGATAT
AGAGAAAATAACAAAGAACATTCAGCATTTGACAGGCTCTAATATTGGCAAATTAGAAGAAGCCACAGACATATAA

Protein sequence : 
MTGPDKEKDFPLENYNKLCFLKNIVKNPNIIVGDYTYYDDFENVENFEKNVKYHFDFIGDKLIIGKFCMIASDVKFIMNG
ANHLTNSLTSYPFAIFGNGWENAMNGKQYPQKGDIIIGNDVWIGYNATIMAGVTVGDGAIIATNSTVIKDVEPYSIVGGN
PAVEIKKRFSSEEIERLLKLKWWEWDIEKITKNIQHLTGSNIGKLEEATDI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
catB8 YP_005797132.1 chloramphenicol acetyltransferase Not tested AbaR4e Protein 4e-30 46
catB3 AET25385.1 chloramphenicol acetyltransferase Not tested PAGI-2(C) Protein 4e-30 45
catB3 AFG30108.1 chloramphenicol acetyltransferase Not tested PAGI-2 Protein 4e-30 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Palpr_0909 YP_004042044.1 transferase hexapeptide repeat containing protein AM180355.1.gene2499. Protein 5e-47 51
Palpr_0909 YP_004042044.1 transferase hexapeptide repeat containing protein AY123251.gene2.p01 Protein 1e-30 46
Palpr_0909 YP_004042044.1 transferase hexapeptide repeat containing protein CP001581.1.gene990.p Protein 3e-35 45
Palpr_0909 YP_004042044.1 transferase hexapeptide repeat containing protein AF322577.2.gene4.p01 Protein 2e-30 45
Palpr_0909 YP_004042044.1 transferase hexapeptide repeat containing protein AY740681.1.gene5.p01 Protein 2e-30 45
Palpr_0909 YP_004042044.1 transferase hexapeptide repeat containing protein JF268688.1.gene6.p01 Protein 8e-29 44
Palpr_0909 YP_004042044.1 transferase hexapeptide repeat containing protein NC_002516.2.878374.p Protein 4e-29 42