|
Name : Palpr_2947 (Palpr_2947) Accession : YP_004044061.1 Strain : Paludibacter propionicigenes WB4 Genome accession: NC_014734 Putative virulence/resistance : Unknown Product : DNA-directed DNA polymerase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0389 EC number : 2.7.7.7 Position : 3524501 - 3525763 bp Length : 1263 bp Strand : - Note : COGs: COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; InterPro IPR001126: IPR017963; KEGG: bfs:BF1928 RumB/ImpB like DNA repair protein; PFAM: UMUC domain protein DNA-repair protein; PRIAM: DNA-directed DNA polymerase; SPTR: RumB/Imp DNA sequence : ATGTTCGGGTTAATTGATTGCAATAACTTTTATGCATCCTGTGAGCGGGTTTTCCAGCCAATGCTCAACGGGAAACCCGT CGTGGTGCTATCGAACAACGACGGATGCGTTATTGCCCGATCGTCCGAAGCAAAAGCGCTCGGCATCCCAATGGGTGAGC CGGCGTATAAACTCAAAGAGCTGATTGAAAGTAACCGGGTGGCCGTTTTTTCGTCCAATTATGTTTTGTACGGAGACATG TCGCACAGGGTTATGAGCATCATTGGAACTTTTGTGCCCGATATGGAGATATACTCCATCGACGAGGCTTTTCTGCATTT CGATGGCTTTGAGAATATCGACCTCAACGGGCTCGCCAATAAACTGGTGCGGACGGTCATAAAAAGCACCGGAATACCCG TAAGTCTGGGCATAGCTCCCACCAAAACACTGGCCAAAGTAGCCAACAAATTTGCCAAGAAATACAAGCAATACAACGGG GTGTGCATAATGGACACCGACGAGAAACGCGAAAAAGCGCTTAAGCTTACGCCCATAGCCAACGTGTGGGGCATTGGCCG GCAATACTCCAAGAAACTGCAATACCACAGCATCAACACGGCCTGGGATTTCACCCTGCGCACCAAAGCCTGGGTAAGGC AGCACATGGGCGTGGTGGGCGAAAGAACCTGGCTCGAACTGCGCGGCACAGCCTGTATTGAAATGGAACGACCGGCTTCG AAAAAATCGATCTGCACTTCGCGCAGTTTTGGCGAAAAGCTGACAAGCATTGAACCCGTATCCGAAGCAGTTGCCAACTT TGCAGCGGCCTGTGCCGAAAAGCTACGCGCGCAAAAAACCACTGCAGCCGTGGTTATGGTATTTATACACACCAATCCCT TTGCCACCAACCAACCGCAGTATGCCAACCAAGCGGTGATGCACCTGCCCGTTTCGACCAACGACACGACCGAAATTATC GACTATGCCCTCAGGGGGCTCAGATCCATCTTCAGGGAAGGCTACCGCTATAAAAAAGCCGGCGTCATAGTAAGCGAAAT ATCTCCCGAGCGTCCGTTGCAGGCCAATCTGTTCGACACGCGCGACCGAACCAAATACAAAAAAGTGATGACCGTAATGG ACAAACTCAACGCGTCCTACGGCAAGCAAAAAGTAAAAATAGCAGCTCAGGGCTTCGACCGGAAGTGGAAACTGAAAAAT GAAAAACTATCGCCCTGCTACAGCACCAATCTGAAAGATATACTGGTAGTAAAAGCAGAATAA Protein sequence : MFGLIDCNNFYASCERVFQPMLNGKPVVVLSNNDGCVIARSSEAKALGIPMGEPAYKLKELIESNRVAVFSSNYVLYGDM SHRVMSIIGTFVPDMEIYSIDEAFLHFDGFENIDLNGLANKLVRTVIKSTGIPVSLGIAPTKTLAKVANKFAKKYKQYNG VCIMDTDEKREKALKLTPIANVWGIGRQYSKKLQYHSINTAWDFTLRTKAWVRQHMGVVGERTWLELRGTACIEMERPAS KKSICTSRSFGEKLTSIEPVSEAVANFAAACAEKLRAQKTTAAVVMVFIHTNPFATNQPQYANQAVMHLPVSTNDTTEII DYALRGLRSIFREGYRYKKAGVIVSEISPERPLQANLFDTRDRTKYKKVMTVMDKLNASYGKQKVKIAAQGFDRKWKLKN EKLSPCYSTNLKDILVVKAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| umuC | NP_807889.1 | DNA polymerase V subunit UmuC | Not tested | SPI-7 | Protein | 4e-70 | 44 |
| samB | NP_458681.1 | UV protection protein | Not tested | SPI-7 | Protein | 4e-70 | 44 |
| rulB | CAI36137.1 | nucleotidyltransferase/DNA polymerase | Not tested | PPHGI-1 | Protein | 3e-72 | 41 |
