Gene Information

Name : Palpr_1980 (Palpr_1980)
Accession : YP_004043102.1
Strain : Paludibacter propionicigenes WB4
Genome accession: NC_014734
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2396622 - 2397284 bp
Length : 663 bp
Strand : -
Note : COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593: IPR003439: IPR015854: IPR017871; KEGG: pru:PRU_0052 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: Lipoprotei

DNA sequence : 
ATGATAAAAGCAGTAAATATACACAAGAGCTTTGGTGAACTGGAAGTGCTTAAAGGGGTTGACTTAACAGTGGCTAAAGG
TGAAATAGTTTCTATTGTAGGACCCAGTGGTGCAGGAAAAACAACATTACTTCAGATTCTGGGAACACTCGATAAGCCCA
ATGCAGGCGAAGTGCTTGTAAATGGTGTTGATTTTAGCAAACTAAATGAAAAGGAGTTGGCAGCATTCAGAAATCGCCAT
ATTGGTTTTATTTTCCAGTTTCATCAGTTGTTACCTGAGTTTACAGCGTTGGAAAATGTAATGATTCCTGCTCTTATTGC
CCGAAAGGATAATAAAAAAACGGCTCAAAAGGCCAAGGAATTATTGGCTTATCTGCAGCTAGCTGACCGTATGGAGCACA
AACCATCAGAACTTTCGGGAGGTGAAAAGCAGCGTGTAGCCGTAGCTCGTGCGTTGATAAATGATCCGTCGTTGATTCTG
GCTGATGAACCGTCTGGAAGTTTAGACTCCAAAAACAAAGATGAATTGCATAAACTCTTGTTTGAACTGCGAGATAAATT
TGGTCTGACGGTGGTGATTGTAACACACGATAAGGATCTGGCTGCTCTTTCCGACAGAGTGATTGAGATGAAGGATGGAC
TTGTTCTGTTGACAGCCATTTAG

Protein sequence : 
MIKAVNIHKSFGELEVLKGVDLTVAKGEIVSIVGPSGAGKTTLLQILGTLDKPNAGEVLVNGVDFSKLNEKELAAFRNRH
IGFIFQFHQLLPEFTALENVMIPALIARKDNKKTAQKAKELLAYLQLADRMEHKPSELSGGEKQRVAVARALINDPSLIL
ADEPSGSLDSKNKDELHKLLFELRDKFGLTVVIVTHDKDLAALSDRVIEMKDGLVLLTAI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 3e-29 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Palpr_1980 YP_004043102.1 ABC transporter NC_012469.1.7686878. Protein 9e-41 48
Palpr_1980 YP_004043102.1 ABC transporter CP001581.1.gene798.p Protein 6e-42 44
Palpr_1980 YP_004043102.1 ABC transporter CP001581.1.gene598.p Protein 7e-40 42
Palpr_1980 YP_004043102.1 ABC transporter NC_008702.1.4606598. Protein 1e-29 41