Gene Information

Name : Palpr_1546 (Palpr_1546)
Accession : YP_004042677.1
Strain : Paludibacter propionicigenes WB4
Genome accession: NC_014734
Putative virulence/resistance : Unknown
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1829889 - 1830584 bp
Length : 696 bp
Strand : -
Note : COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: zpr:ZPR_1366 two component transcriptional regulator, winged helix family; PFAM: response regulator rec

DNA sequence :
ATGAGTTCTAAAATGAATATTTTAATCATTGACGATGAAGTGCAAATTCAAAAATTGCTCGAAATTACGCTGAATAATAA
TGATTATCATACCCTGATAGCTTCCACTGCTAAGGAAGGTATTTCCACTGCCGTAATTCATCCGCCTGATTTAATAGTGC
TGGATTTGGGGCTGCCGGACGAAGATGGGCAAAGTGTGTTGATTAAGCTGCGCGAGTGGTATTTGGGTGCTATCATTATT
CTTTCTGTTCGCAGTTCGGAAGAGGATATTATCCGGGCATTGGACAATGGCGCAAACGATTATCTGACAAAGCCGTTTCG
CACAGGCGAGTTGCTGGCGCGAATCCGCACAGCTTTGCGTCAGACTCAATTAAACCCAACAGTTCAAAAACTGGAATTTG
ATAATCTGAGTATCGACCTTACTTCACGGACGGTAACTCTCGATAATGAGTCATTGAAATTGACAGCCACTGAATATTCA
TTACTGACTTTACTGGCAAAGAATGATGGTAAAGTGCTGACTCACCAATATATCCTTAAGCAAATCTGGGGCCCCGGTTA
CACACAACAATCGCAATATCTGCGTGTTTTTGTGGGGCAATTACGCAAGAAAATTGAACCGAATCCGAATAATCCTAAAT
TTATTCTCACAGAATCCGGTATAGGCTATCGCTTTTGTACCAAAGGGGAGGAGTAA

Protein sequence :
MSSKMNILIIDDEVQIQKLLEITLNNNDYHTLIASTAKEGISTAVIHPPDLIVLDLGLPDEDGQSVLIKLREWYLGAIII
LSVRSSEEDIIRALDNGANDYLTKPFRTGELLARIRTALRQTQLNPTVQKLEFDNLSIDLTSRTVTLDNESLKLTATEYS
LLTLLAKNDGKVLTHQYILKQIWGPGYTQQSQYLRVFVGQLRKKIEPNPNNPKFILTESGIGYRFCTKGEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0571 NP_814337.1 DNA-binding response regulator Not tested Not named Protein 4e-39 43
ef0091 AAM75294.1 EF0091 Not tested Not named Protein 3e-39 43
kdpE YP_039536.1 response regulator protein Not tested Type-II SCCmec Protein 6e-34 41
kdpE NP_370594.1 transcriptional regulator kdpE Not tested Type-II SCCmec Protein 6e-34 41
kdpE NP_373306.1 hypothetical protein Not tested Type-II SCCmec Protein 6e-34 41
kdeP YP_190033.1 DNA-binding response regulator KdeP Not tested Type-II SCCmec Protein 6e-34 41
SH0031 YP_251946.1 hypothetical protein Not tested SCCmec Protein 2e-34 41
kdpE BAA82188.1 KDP operon transcriptional regulatory protein KdpE Not tested Type-II SCCmec Protein 4e-34 41