|
Name : Palpr_0101 (Palpr_0101) Accession : YP_004041248.1 Strain : Paludibacter propionicigenes WB4 Genome accession: NC_014734 Putative virulence/resistance : Virulence Product : ATP-dependent chaperone clpb Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 115894 - 118485 bp Length : 2592 bp Strand : + Note : COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR004176: IPR003959: IPR013093: IPR019489: IPR 003593: IPR017730: IPR001270: IPR018368; KEGG: pdi:BDI_1223 endopeptidase Clp ATP-binding chain B; PFAM: ATPase AAA; ATPase AAA centr DNA sequence : ATGAACTTAAATAACTTTACGCTGAAATCTCAGGAAGCTGTACAGGAAGCTGTTGAACTGGTACAAGCTAATGGTCAGCA GGTAGTAGAAACTCCTCACTTGTTCAAAGCAGTAGTCCATAAAGGTGAGGACATAACAAAATTTTTATTCGGTAAGTTGG GCGTTAATGCTTCGGCGCTTGAAGCTGTTGTTGATAGCCTGATAGCCGGTTTACCGCGGGTGTCCGGTGGTGAGCCTTAC CTGAGCAGAGAGACCAACGCCGTGTTACAAAAAGCTACGGCGCTTTCATCCAAGGCCGGTGATCAGTTTGTGTCGTTGGA GTATTTACTCTTAGCGCTTATAGCCGAAAGAAATGCAATGACCAAGGTGCTCAAAGATGCCGGATTATCAGAATCTGAAT TACAAAAAGCCATTATGGAACTCCGAAAAGGAGCGAAAGTAGATTCGGCTACAGCCGAAGAAAGCTATAATGCGCTGAAC AAATACGCCATTAACCTCAACGAACAAGCACGTGCCGGTAAGCTGGATCCTGTGATTGGGCGTGATGAAGAAATCCGTCG GGTGCTTCAGATATTGAGCCGTCGTACCAAGAATAATCCTATTTTGATAGGTGAGCCTGGTGTGGGTAAAACCGCCATTG CCGAAGGGCTTGCACATCGTATTGTTCGCGGCGATGTACCTGAAAACTTGAAATCGAAACAGATTTTCTCGCTCGATATG GGTGCGTTGATTGCCGGTGCTAAATACAAGGGTGAGTTTGAAGAAAGACTGAAAGCCGTAGTGAATGAAGTGATCAAAGC CGATGGTGAAGTGATTCTGTTCATTGACGAAATTCATACCTTGGTGGGAGCGGGCAAGAGCGATGGAGCCATGGATGCTG CCAACATACTGAAACCCGCACTGGCACGTGGTGAGCTGAGGGCTATCGGTGCAACTACGCTGGATGAATATCAAAAGTAT TTTGAAAAAGATAAGGCGTTAGAACGTCGTTTTCAGCTTGTAACTGTAGATGAACCGGATGTACCGAGTACCATTTCCAT TTTACGTGGACTGAAGGAACGTTATGAAAATCACCACAAAGTGAGAATCAAAGATGATGCAATCATCGCTGCGGTGGAAC TATCGAGCCGGTATATTACCAATCGGTTTTTGCCTGATAAAGCCATCGACCTGATGGACGAAGCGGCTGCCAAACTCCGG CTAGAGGTGGATTCTGTGCCCGAAGAACTGGATATTATCGACCGTAACATTAAACAGTTGGAGATAGAACGAGAAGCCAT CAAGCGCGAAAACGATACCCGTAAACTGGCTCAGCTCAACGAGGAAATTGCCAACCTGAAAGAAGAGGGTAAAGAGATGC GTGCCAAATGGTCGAGCGAAAAGCAGCTGATAGACGGTATTCAGCAAACCAAGGTAGACATTGAAAACCTGAAATACGAA GCCGACAAGGCTGAACGCAACGGCGACTACGGACTGGTGGCGGAAATTCGTTACGGAAAGATAAAGGCTGCCGAGGAACA GATAGCTCAGCTGCAAACCAAACTGGCTGCTATGCAGGGAGCACACGCTCTGATAAAAGAGGAGGTGGATAGCGAAGACA TAGCCGATGTGGTAAGTCGCTGGACAGGCATTCCGGTAAAGAAAATGCTGCAAAGCGAAAAAGATAAATTGCTGCATCTG GAAGACGAGCTGCACAAGCGTGTGGTGGGTCAGGAGGAAGCGATAGCTGCGGTTTCGGATGCTGTACGTAGAAGTAGGGC AGGACTGCAAGACCCTAAGCGACCTATCGGTTCGTTTATATTCCTTGGTACTACCGGTGTGGGTAAAACCGAGCTGGCTA AAGCGCTGGCCGAATACCTGTTCGATGACGAAAACATGATGACGCGTATCGATATGAGTGAGTATCAGGAGAAATTCTCC GTTACCCGTCTGATAGGGTCGCCTCCGGGATATGTGGGCTACGATGAAGGTGGGCAGCTGACCGAAGCCATACGACGCAA ACCGTATTCGGTCGTGCTTTTCGATGAGATAGAAAAGGCACATCCCGACGTGTTCAACGTGCTGCTGCAAGTGTTGGACG ACGGACGTTTGACGGATAACAAAGGCCGGTTGGTGAACTTCAAAAACACTATTATCATTATGACTTCGAACATCGGGTCG TCGCTGATACAGGAAAGTTTTGAAGGAATGACCGATAAAAATCAGGCTGAAATTGTCGAGAGAACCAAGCTGCAGGTATT CGAACTGTTGAAACAAACCATTCGTCCTGAGTTTTTGAACCGTATTGACGAACTGGTGATGTTTGCGCCGCTCAACGAAA CACAGATTGAAGAAATTGTTCGTTTGCAGATTTCGATTATACAGCATACGCTTGCGGGCAACGGTGTACAACTGGAGCTG ACCGAGGCTGCCGTGCAGTATATAGCTGCTGAAGGTTTCGATCCTCAATTTGGAGCGCGCCCGGTGAAACGTGCCATACA GAAATATGTCCTTAACGACTTGAGCAAACAGCTTATTGGCGGAGCGGTACATGCCGATCAAACCATAGTGGTAGATTACG ACGGAACACGGTTGGTGTTTGGAAATAAATAA Protein sequence : MNLNNFTLKSQEAVQEAVELVQANGQQVVETPHLFKAVVHKGEDITKFLFGKLGVNASALEAVVDSLIAGLPRVSGGEPY LSRETNAVLQKATALSSKAGDQFVSLEYLLLALIAERNAMTKVLKDAGLSESELQKAIMELRKGAKVDSATAEESYNALN KYAINLNEQARAGKLDPVIGRDEEIRRVLQILSRRTKNNPILIGEPGVGKTAIAEGLAHRIVRGDVPENLKSKQIFSLDM GALIAGAKYKGEFEERLKAVVNEVIKADGEVILFIDEIHTLVGAGKSDGAMDAANILKPALARGELRAIGATTLDEYQKY FEKDKALERRFQLVTVDEPDVPSTISILRGLKERYENHHKVRIKDDAIIAAVELSSRYITNRFLPDKAIDLMDEAAAKLR LEVDSVPEELDIIDRNIKQLEIEREAIKRENDTRKLAQLNEEIANLKEEGKEMRAKWSSEKQLIDGIQQTKVDIENLKYE ADKAERNGDYGLVAEIRYGKIKAAEEQIAQLQTKLAAMQGAHALIKEEVDSEDIADVVSRWTGIPVKKMLQSEKDKLLHL EDELHKRVVGQEEAIAAVSDAVRRSRAGLQDPKRPIGSFIFLGTTGVGKTELAKALAEYLFDDENMMTRIDMSEYQEKFS VTRLIGSPPGYVGYDEGGQLTEAIRRKPYSVVLFDEIEKAHPDVFNVLLQVLDDGRLTDNKGRLVNFKNTIIIMTSNIGS SLIQESFEGMTDKNQAEIVERTKLQVFELLKQTIRPEFLNRIDELVMFAPLNETQIEEIVRLQISIIQHTLAGNGVQLEL TEAAVQYIAAEGFDPQFGARPVKRAIQKYVLNDLSKQLIGGAVHADQTIVVDYDGTRLVFGNK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 9e-108 | 42 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 7e-108 | 42 |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 2e-105 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Palpr_0101 | YP_004041248.1 | ATP-dependent chaperone clpb | VFG2084 | Protein | 1e-110 | 44 |
