Gene Information

Name : Hbor_04270 (Hbor_04270)
Accession : YP_004035470.1
Strain : Halogeometricum borinquense DSM 11551
Genome accession: NC_014729
Putative virulence/resistance : Virulence
Product : cobalamin/Fe3+-siderophore ABC transporter ATPase
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 404858 - 405706 bp
Length : 849 bp
Strand : +
Note : PFAM: ABC transporter

DNA sequence : 
ATGGCTGAAAGCGAATACGAACACATGACTGTGGAACAGACGCAAAACAAAGGCGAACAAACCGACGTAGTAAGCGCGCT
TGTCGGTGACGACCTGACGCTGTCGTATGCGACGACTGACCAGCCAGTCGTCGAGTGCGACAGAATCGACATTCCGCGCG
GGGAGATAACCGCGCTCGTCGGTCCGAACGGCAGTGGGAAGAGTACGCTGTTGAAGGCGCTCTCGAAGCAACTCGCCCCA
GACACCGGGAACGTCCTGCTCGACGGACAGACGATTCAGGAGTACGGCGACAAGGAGTTCGCCCGCGAACTCGGACTGCT
CTCCCAAGAAAACGACTCTCCGAACACGATTACCGTCGAAGAGTTGGCCTACCACGGTCGCTATCCGCACCGCGGCTTCT
TCGAACAGGTTAGCGAGGAAGACGAGGAGGCAGTCGAACGCGCCATCGACCTCGCCGGCGTCGATCACATTCGCGACCAG
ACGGTCGGCAATCTCAGTGGCGGCCAAAAGCAACTCGCGTGGATTGCGATGGTACTCGCACAGGATACCGATGTGCTTCT
CCTCGACGAACCGACGACGTATCTCGACTTACACCACCAACTCCGCGTGATGGAAACGGTCCAACAACTGAACGACCGGC
GCGACGTAACCATCGCCGTTGTGCTCCACGACATCGCCCAAGCCGCCCGCTTTGCCGACTATCTCATCGCGCTGCAAGAC
GGTGAGGTGTACGACTGGGGACCGCCGCGCGAAGTCGTTACCGAGGAACTCCTCGCGGATGTGTTCCGTGTTGAAGCAGC
CGTGTCTTACACGCCAGATCCCGAAATAATCCCCAAACATTCACTGTAG

Protein sequence : 
MAESEYEHMTVEQTQNKGEQTDVVSALVGDDLTLSYATTDQPVVECDRIDIPRGEITALVGPNGSGKSTLLKALSKQLAP
DTGNVLLDGQTIQEYGDKEFARELGLLSQENDSPNTITVEELAYHGRYPHRGFFEQVSEEDEEAVERAIDLAGVDHIRDQ
TVGNLSGGQKQLAWIAMVLAQDTDVLLLDEPTTYLDLHHQLRVMETVQQLNDRRDVTIAVVLHDIAQAARFADYLIALQD
GEVYDWGPPREVVTEELLADVFRVEAAVSYTPDPEIIPKHSL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 4e-44 45
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 2e-44 44
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-44 44
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-44 44
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-44 44
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 4e-38 43
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-41 42
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-41 42
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-41 42
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-41 42
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-42 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hbor_04270 YP_004035470.1 cobalamin/Fe3+-siderophore ABC transporter ATPase BAC0164 Protein 3e-38 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hbor_04270 YP_004035470.1 cobalamin/Fe3+-siderophore ABC transporter ATPase VFG0925 Protein 4e-52 50
Hbor_04270 YP_004035470.1 cobalamin/Fe3+-siderophore ABC transporter ATPase VFG1042 Protein 2e-38 43