|
Name : LA2_01945 (LA2_01945) Accession : YP_004031175.1 Strain : Lactobacillus amylovorus GRL 1112 Genome accession: NC_014724 Putative virulence/resistance : Unknown Product : transposase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG3666 EC number : - Position : 372079 - 373779 bp Length : 1701 bp Strand : - Note : COG3666 transposase and inactivated derivatives DNA sequence : ATGTATCAAAATTATATCACAGGACAAACTACTTTATCATTAAATTTGGATTTTTCTATCCCTGCAAATCACATTGCCAG TGTTATCAGTGAATTCGTTGATTCTATTCCTAACGAAGTTATCTTAGAAACCACTTCTAATACAGGCAGACCTGCATATC ACCCGGCAATGATGCTTAAGATTTTACTCTTTGCTTATTCCAGAAGAGTTTTTTCAGGCAGAAAAATTGAAAGAATGCTA GAAGAGAATCTGCCCATGATGATTTTGGCTGACAATAGAAAGATTTCTTATCACACGATCAATAATTTCAGATCAAGCGA CCATGCCAATAAGGTAATTAAGCAGTGCTTTGTCTACTTTACTTCATTATTAGAAGATGAGGGATTAATCCGTGAAAATG CAGTTTTTATCGATGGTACTAAGATTGAAGCGGACGCCAACAGGTACACTTTTGTCTGGCGAAAAGCTATTGAGAAGTAT CATGCCAAGTTAAAGGAAGACGTGTCTGCTTTATATGAAGAACTGATCAATAAAGAAGTAGTCAAAGCCATGGCCGAAGA AGAAGCCCAAACTAGTCAAGGCTTAGAGATTCTGGCTCAAGAAACGGAAAAAGAAGTTGAGAAGCTGACCGATAAAATTG ATCGAGAACCTAAAGCCATTCCAGGCGGATCAAAAAATAAGGCCAAGCGCCGTGAATTAAAGAAGATCGCACATAAACTC AGAAAAGATTTTATTCCGCGTGCTAAAAAGTACGAAGAAGCTGAAGAGATCTTTGCTGGCCGTAACAGCTACTCTAAAAC AGATCATGATGCCACCTTCATGCATATGAAAGAAGATCATATGAAAAACGGGCAGCTAAAGCCAGGCTACAATATTCAGG CAGCGACTACTAATCAATATATAGTTGATTTTGCCCTGTTTCCTAATCCGACTGACTTTAGAACATTCGAACCATTTCTA GACCAAATGAAGTCCAGAGGAATTCTCGATAAGTTTCAAAATATTGTGGCCGATGCGGGCTATGGCAGTGAATACAATTA CTCGATTCTGGAAGAGAATTATTCAGATAAGAACTATCAGATTCCGTATACCCAATACGAAAAAGAACAAACGCGAAAAT ATAAGAAAGATCCATCAAAGGTCGACAACTGGTACTATAACGAAGAAGAAGACTATTACGTAGATAAATCAGGCGTCCGC TTCAACTTCAAATATTATAGTCAAAGAAAAGATCGATCTACTGGCATGGTCAGAAACTTCAAAATTTATGAAGCTGATGA GTTCCAGCTAACTGAAGAACTGACCCAATTGGCTAAAACCAAAACAGGTCGACAAAGACAGATTCACTACAATCCTAACT GGCAGTATTTAAAAGAAAAAGCAAAAGAGACTCTTCAAAGCGAAGAAGGCAAACGCATCTATGGCTGTCGCAAGTCAGAT GTGGAGCCAATTTTCGGGCACATGAAGAGTGTATTTGGTATGCGCAGAACGCATTTAAGAGGCAAAAAGAAAGTCGAAAC GGATGTTGGCATCATGTTCATGACGATGAATTTGAAAAAATATGGAGCCAAGAAGAAGGTAAAGCCTTCGAATTTTCATT TCAAAAACAAAAAACACAGGAATTCACTAAAAATAATGAATTCCTGTGTTTTTATATCCGGGCTAAAAATCGAGTTTCTT CCCAGACACTTAATCTTTTAG Protein sequence : MYQNYITGQTTLSLNLDFSIPANHIASVISEFVDSIPNEVILETTSNTGRPAYHPAMMLKILLFAYSRRVFSGRKIERML EENLPMMILADNRKISYHTINNFRSSDHANKVIKQCFVYFTSLLEDEGLIRENAVFIDGTKIEADANRYTFVWRKAIEKY HAKLKEDVSALYEELINKEVVKAMAEEEAQTSQGLEILAQETEKEVEKLTDKIDREPKAIPGGSKNKAKRRELKKIAHKL RKDFIPRAKKYEEAEEIFAGRNSYSKTDHDATFMHMKEDHMKNGQLKPGYNIQAATTNQYIVDFALFPNPTDFRTFEPFL DQMKSRGILDKFQNIVADAGYGSEYNYSILEENYSDKNYQIPYTQYEKEQTRKYKKDPSKVDNWYYNEEEDYYVDKSGVR FNFKYYSQRKDRSTGMVRNFKIYEADEFQLTEELTQLAKTKTGRQRQIHYNPNWQYLKEKAKETLQSEEGKRIYGCRKSD VEPIFGHMKSVFGMRRTHLRGKKKVETDVGIMFMTMNLKKYGAKKKVKPSNFHFKNKKHRNSLKIMNSCVFISGLKIEFL PRHLIF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tnp | YP_254534.1 | IS1272 transposase | Not tested | ¥ðSh2 | Protein | 2e-68 | 42 |
| SAMSHR1132_00350 | YP_005324559.1 | putative transposase | Not tested | Type-IIIinv SCCmec | Protein | 2e-72 | 42 |
| MW0034 | NP_644849.1 | hypothetical protein | Not tested | Type-IV SCCmec | Protein | 2e-72 | 42 |
| unnamed | BAA86649.1 | hypothetical protein | Not tested | Type-I SCCmec | Protein | 2e-72 | 42 |
| SACOL0036 | YP_184947.1 | IS1272 transposase | Not tested | Type-I SCCmec | Protein | 2e-72 | 42 |
| SAUSA300_0034 | YP_492755.1 | IS1272, transposase | Not tested | Type-IV SCCmec | Protein | 5e-70 | 42 |
