Gene Information

Name : LA2_00535 (LA2_00535)
Accession : YP_004030902.1
Strain : Lactobacillus amylovorus GRL 1112
Genome accession: NC_014724
Putative virulence/resistance : Unknown
Product : rRNA large subunit methyltransferase
Function : -
COG functional category : S : Function unknown
COG ID : COG1576
EC number : -
Position : 106025 - 106504 bp
Length : 480 bp
Strand : +
Note : COG1576 conserved protein

DNA sequence :
ATGAATATTAAGATTGTTTGTGTTGGAAAATTAAAAGAGAAATATTTTAAAGATGCGATTGCGGAATATAAAAAGCGACT
AAATCGTTTTGCAAAAGTATCGATTGTGCAGGTGCCTGACGAAAAAGCACCGGAAAAATTCAGTGCGGCTGAAGACGAAA
AGGTTAAGGAAATTGAAGGCCAGCGAATTTTAAGCAAGATCAAGGATAAGGAGTACGTGTACGTTACTGCGATTAAGGGA
AAGCAGCGTAGCAGTGAGGAATTTGCTAAAGAAATTCAGGATTTGGCAACGTATGGCCATTCGGATATTACCTTCGTCAT
TGGTGGTAGCTTGGGAACAAGCGATGCAGTGAATAAGCGCGGGGATGATCTGATCAGTTTTGGTAAGTTGACCATGCCAC
ACCAGTTGATGCGGGTGGTTTTGATTGAGCAGATCTATCGTGCGTTCATGATTAACTCGGGTAGTCCATATCATAAGTAG

Protein sequence :
MNIKIVCVGKLKEKYFKDAIAEYKKRLNRFAKVSIVQVPDEKAPEKFSAAEDEKVKEIEGQRILSKIKDKEYVYVTAIKG
KQRSSEEFAKEIQDLATYGHSDITFVIGGSLGTSDAVNKRGDDLISFGKLTMPHQLMRVVLIEQIYRAFMINSGSPYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 7e-38 58
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 7e-38 58
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 4e-35 58
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 7e-38 58
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 7e-38 58
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 7e-38 58
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 1e-37 58
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 7e-38 58
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 7e-38 58
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 1e-37 58
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 7e-38 58
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 7e-38 58
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 9e-39 58
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 7e-38 58
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 9e-39 58
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 1e-37 57
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 1e-37 57
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 2e-38 57
unnamed ACL99851.1 hypothetical protein Not tested Type-V SCCmec Protein 1e-21 57