Gene Information

Name : RBRH_04308 (RBRH_04308)
Accession : YP_004030735.1
Strain :
Genome accession: NC_014723
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4584
EC number : -
Position : 153835 - 154911 bp
Length : 1077 bp
Strand : -
Note : Transposase; COG: Transposase and inactivated derivatives; Pfam: Integrase core domain::PF00665

DNA sequence :
GTGAACCACCTTTCAGTACAGTCAGCCTTTTTCGCGCGAAGGCTGGCGATGCTTCAGAAGGAACAGTGGATGCAAGTCCA
TGTACTCAAAGCCCAAGGGTTGTCGTTGCGAGAGATCGCGCGGCGCCTGGGCGTGTCTCGCAACACTGTGACGCGTTACT
TGGCGTCGCAGGACGTGCCTCGCTACAAGCAGCGTGAACCACGGCCGAGCAAGCTTGATCAGTTTCAGGCGTACATTCTT
GAGAGGATGCAAGCGGCCTGGCCCGAGACGATCGCCGCTCCAGCGTTGCTGCGTGAACTGCGCGCGCTGGGCTATGAAGG
GCAGCTGCGCAGTATTCAAGCTTTTATGAAGGCGCACAAACCTGTGCCGGCACCTGATCCGCTCGTGCGCTTCGAGACCG
AGCCGGAGCGACAGATGCAATGCGACTTCGTCGTATTTCGTCGCGGCGCTGATCCGCTGTACGCGTTCACCGCCACGCTC
GGTTTTAGCCGTTGGCGCTGGGCACGCTTTGCCACCAACGAGAAGGCCGAAACGCTGATTGCTTGCCATCACGCTTTATT
TGAAACGCTCGGCGGGGTGCCTTGCGAGATCCTGTACGACAACGCCAAGACGATCGTGCTCGAGCGTGATGCGTACGGTA
AGGGTGAACATCGATGGCATCCAGGTCTACTCGATCTGGCTAAGCGCTACGGCTTCATGCCCAGACTCTGCCAGCCCTAT
CGCGCGCGCACGAAGGGCAAGGTCGAGCGCTTCCATCGGTATCTGCGCGGCAACTTTTATGTGCCGCTGTCCAGTTGGCT
CAAGCAGTCGGGTATGGTACTGGACGTCGATACGGCCAACGCCGAGGTAGGCAAATGGCTGCGAGACGTTGCAAACCAAC
GGGTGCACCCGGTCACGGGAGCGCCACCAGCAACGCTTCTCGAAGAGCGCGAACGAGACACGCTGCGCAGCTTGCCCGCG
TTTGCAACACAGCTATGGGTAACCACGCCGGTCGGCAGACCGTCGGCACCTTCAGCCATATCGTTGCAGCATCCCTTGTC
GGTCTACCAGCAATTGCTGACCGAGGTGCATGCATGA

Protein sequence :
MNHLSVQSAFFARRLAMLQKEQWMQVHVLKAQGLSLREIARRLGVSRNTVTRYLASQDVPRYKQREPRPSKLDQFQAYIL
ERMQAAWPETIAAPALLRELRALGYEGQLRSIQAFMKAHKPVPAPDPLVRFETEPERQMQCDFVVFRRGADPLYAFTATL
GFSRWRWARFATNEKAETLIACHHALFETLGGVPCEILYDNAKTIVLERDAYGKGEHRWHPGLLDLAKRYGFMPRLCQPY
RARTKGKVERFHRYLRGNFYVPLSSWLKQSGMVLDVDTANAEVGKWLRDVANQRVHPVTGAPPATLLEERERDTLRSLPA
FATQLWVTTPVGRPSAPSAISLQHPLSVYQQLLTEVHA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
y2411 NP_669718.1 transposase Not tested HPI Protein 9e-59 45
YPTB1585 YP_070113.1 transposase Not tested HPI Protein 9e-59 45
unnamed CAA21403.1 - Not tested HPI Protein 9e-59 45
unnamed CAB46599.1 IS100 transposase Not tested HPI Protein 7e-59 45
api83 CAF28557.1 transposase Not tested YAPI Protein 7e-59 45
y1093 YP_002346890.1 transposase for insertion sequence IS100 Not tested HPI Protein 9e-59 45
orfA CAE85182.1 OrfA protein, transposase, IS100 Not tested PAI V 536 Protein 8e-60 45
y1094 CAC43410.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 8e-60 45
y1093 CAD33720.1 ORF A protein Not tested PAI I 536 Protein 1e-59 45
s0035 CAD33773.1 ORF A protein Not tested PAI I 536 Protein 8e-60 45
y1094 CAD42088.1 OrfA protein of IS100 transposase Not tested PAI II 536 Protein 8e-60 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RBRH_04308 YP_004030735.1 transposase VFG1607 Protein 5e-60 45
RBRH_04308 YP_004030735.1 transposase VFG1461 Protein 7e-60 45
RBRH_04308 YP_004030735.1 transposase VFG1514 Protein 5e-60 45
RBRH_04308 YP_004030735.1 transposase VFG1626 Protein 5e-60 45